Report for Sequence Feature Glyma08g15560
Feature Type: gene_model
Chromosome: Gm08
Start: 11281446
stop: 11292756
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g15560
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G18730 AT
Annotation by Michelle Graham. TAIR10: tetratricopeptide repeat (TPR)-containing protein | chr3:6446062-6453045 REVERSE LENGTH=1311
SoyBase E_val: 0 ISS
GO:0000086 GO-bp
Annotation by Michelle Graham. GO Biological Process: G2/M transition of mitotic cell cycle
SoyBase N/A ISS
GO:0009933 GO-bp
Annotation by Michelle Graham. GO Biological Process: meristem structural organization
SoyBase N/A ISS
GO:0009934 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of meristem structural organization
SoyBase N/A ISS
GO:0051301 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell division
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
KOG1909
KOG
Ran GTPase-activating protein
JGI ISS
PTHR10098 Panther
RAPSYN
JGI ISS
PTHR10098:SF8 Panther
RAPSYNOID
JGI ISS
UniRef100_G7LD57 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein BRUSHY n=1 Tax=Medicago truncatula RepID=G7LD57_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI00023389FE UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023389FE related cluster n=1 Tax=unknown RepID=UPI00023389FE
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g15560
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g15560
Paralog Evidence Comments
Glyma05g32290 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g15560 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g147000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g15560
Coding sequences of Glyma08g15560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g15560.1 sequence type=CDS gene model=Glyma08g15560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACGCGGATCTGAAGTCGGCGAAGGCGGCGTACCGGAACGCCAAGGCGGAGGGAAACCACCGAGAGGAGGCGCGGTGGGCCAACGTCATCGGCGACATACTCAAAAACCGAGGAGAGTACGTCCAAGCCCTCAAATGGCTCCGAATCGATTACGAAATTTCGCTCAAACACTTACCGGAAAAGCATTTGCTCCCAACTTGTCAATCCCTTGGCGAAATGTATCTCCGCCTCGAACACTTCTCCGATGCCCTAATTTATCAGAAAAAGCATTTAGATCTTGCGAGGGACGCTGGCGACGTCGTTGAGCAACAGCGGGCGAGCACGCAACTCGGTCGCACTTACCACGAGCTCTTCTCGCGATCGGAGCACGACCACAACTCAATTCGCAACGCGAAGAAGTACTTCAAGTCCGCGATGGATCTCGCGGTGAAGCTCCAGGAGAATCCTCCAAACAGCAAGTCCTCTTTTCTCAAGGAGTACATCGACGCGCACAACAACATAGGCATGCTGGAGATGGATCTCGACAACTTGCATGAGGCGCGGAAGATTTTAACTAGAGGATTGGAGATTTGTAATGACGAGGAGGTCGCTGAATTCGATGATGGCCGCAGTAGACTCCACCACAACCTTGGGAATGTGTATATGGAACTTAGGGATTGGGATAAAGCTAGGAAACACATTAGAACGGATATTGTGATTTGTAACAGAATTGGACATGTTCAAGGGGAAGCCAAGGGGTATATTAATCTTGGTGAAGTGAATTACAGGACTCAGAAGTATGAAGATGCAAGTGCTTATTACGAGAAGGCGCTTGGTTTGGCAAAGAGCTTGGAGGATGAGGATGCTTTGGTAAGGCAAATCGAGCAGAATATTGAAACTGTGAGAGAAGCTGTTAAGGTAATGGCTGATATAAAGAAAGAGGAGCAGAGCCTTAAGAAGCTCAAAAGAGATATAGCCACTGCCAGAGGGACACCAAATGAGCGCAAATTCTTGCTGCAGCAGAATGCAGTTCTTGAGCGTTTGGTTGAGAAAGCAAGGATGATCTCTGCGTGGGAGAAGCATTGTGAATTTGCAAAGGAGAAGAAGAAAATAGCAAGTGAACTCTGTGATAGGCAGAGACTGGCTGATTCATATCTGGATGTTGCAGAATCATACCATAAACTCAGAAAATTCAACAAAGCAATCAAGTGGTACAAAAAGAGTTGGGAAATGTACAAAAATATTGGTAACTTAGAGGGGCAAGCAATGGTGAAAATTAATATTGGTAATGTTTATGATTCTACTGAAAGTTGGAGAAAAGCATTGGATGCATTTCAAGAGAGCTACAGTATCGCTGTTGAAGCAGACCTCCCTGATGTGCAACTCGCTGCCTTGGAAAATATGCATTATAGCAACATGATAAGATTTGATGATGAGGATGAGACAAGGAGGTTGAATCTTCTAATTGATAAGCTGAAGAAATTAGAAGAAAAAGAGGCAGAAGCTAAAAGTATGCCAGAGGATTTTTGCTCTGAAACTGATACTGAAGCAGATGAGTGTCTGTCAAACAGTGGGTCTGATGATTTTTGCTTTCCAAAGACAATTTCTCGATCAAAAACTCTGACTACTGGAGAAGAATTGAAAGAGGACGCACCTCTTATGTCACTCTATCAGTCCTTAAAAGGCTCATCCAAAAAGAAAGCAGGCCACAAAGAAAGTCTTGCCAACTCTACCAAGCAAGATGAGCATTCACCCAGTAGTCTGAAAAATCAAACCAGTGATCATCAGACAGTTGTTGGTCGTAAACGTGTCCGTGTAATTCTTTCTGATGATGATGATGATGAAGTCGAGTGTTCAAGCAGAAAGGATCATAATTGCCCGGTAGAGGACTTGCCCACTTATGATGCCATTAAGAGTAAAGCCAGTCCTTGTAAATTTCAGGTTATCTCAGAAAATGGATCCAAGACTGCAATTAATGTTGAAGAAAGTAGTAGTTCTTTCAAATGTTGGAGTCCACATAGAGCCACAAAATCTGGCAGACATTCCAGGTCTTTTAGCAATGATATAGTTGCTGAACCTGATTTTCCTGGTGGTTCTAAATGTGACACTGATGTCTCTGGCAAACAAAATGATATTACCCAGCCTATGTTGCATCATTCCCAAAATGACCTCCAGCAATATGTTACATGCCGGATTGGGAATGACCTAATACGTGTAGAAGCATCCTTGTGTACCACTGGTGACCAGTTGAACATTGACTCTTTGAAGGCTGTAGTTGCTTGCTTATATTATCTACAATTTCCAACTGAAAAGAGATCAGAGGGTTTGTTGCCCATTATTGAGCATATAAAATGTGCTGGAAGAGATCTAGAATCCCTGGAAACTGTTGAACATCTTAAGGAAGTTTTGGGAAATGACATGGTTGAAGCTTCCGTTGATGGATGGATTCACAAGGGCCTGATAAAAATGTATGTAGACCACTGCAAGGAGTTGTCAGAGGTACCGAACATCAAGGTATTGAAGAAGCTTTACAATTTAGAGGTTTCAGATGACGAAATTGTTGTGTCTGACTGCGACCTTCAAGACTTGTCTATTACACCATTGATAAATGCACTGCATTCTCAAAAGTCATTTGCAATGCTTGACCTCTCTCACAATTTGTTAGGAAATGGAACAATCGAGAAACTGCAAAAGGTGTTCACAGCATCAGGACAATCTTATGGTGGCTTAACTCTGGATTTGCATTGCAATCGATTTGGCCCAACATCATTGTTTCAGATTTGTGAATGTTCACTGCTATTTGATCGACTAGAAGTGCTTAACATTTCTGGAAACCGTCTTACTGATGCATGTGGATCTTATCTTTCAACAATATTAAAAAACTGTACAGCTCTTTGTAGCTTGAATATAGAGAACTGTTGTGTCACATCCAGAACTATTCAAAAAGTTGCGGATGCATTGGACTCTACATCTGTTCTTGCCCATCTATGTATAGGATACAACAGCCCTGTATCTGGAAATGCTATAGTTAATCTTGTGTCCAAGCTTTCTACTCTGAAAAGGTTTTCTGAGTTGAATATGAGTGGTCTAAAACTAGGCAAACCAGTTGTCGATACCCTTTGCAAGCTTGCAGGGACCTTAAATTTGTCAGGACTAATACTTGGAGGCACGGGTGTTGGAACTGAAGGGGCAATTAAATTAGCAGAATCATTGCTCCAAGGGACTGAAGAGCTTGTGAAACTTGACCTATCATATTGTGGTCTAACATTTAACTTTGTTTTAAACACCAGTGTTAATTTTTTTTGTTCCATCCTAGAGCTGAACCTGGAAGGAAATCCTATCATGCCTGAGGGCAGCAATACTTTATTTTCTCTTCTTGTAAACCCACAGTGCTGTCTCAAAGTTTTGGTCCTTAAAAAGTGTCAACTTGGGCTTGCAGGAATTCTTCACATAATCGAGGCTCTGGCAGAGAACAGCTGCCTTGAGGAACTTAATGTTGCTAATAATTCTATTCCGAAGGAAGTTTCTGCTCTACAATATGATTTATCGGTAAAAAGCTGCTCACAAAACCAGGAGCAGAAACTTGATACTATGAAAGTTGATGATAATCAAGAGGTCCTTGGCTCTCTAAACAGTGCCGACCATCTACTGGAAGTTGCTGATAGTGAAGATGTTCCAGTAGAAACAGCTGCTTCTGGATTTGACGACAGCTGTGCCAGTTCATGTCAAAGAAATTCATCTCCCGAGTGCCATTTCACGCAACAGTTTTCAATTGCTATTGGTAAGGCAAAGAACTTGCAATTACTAGACCTTAGCAATAACGGTTTTTCTGCACAAGCTGCGGAAGCATTCTATGGTTCGTGGGCGACTTTACGGCCCCTTTCAAGTCAAAACCACATTACTGAGCAGATAATTCACTTCTCAACGAGGGAAAATAAGTGCTGTAGAGTGAAACCTTGCTGCAAGAAAGTTTGA
Predicted protein sequences of Glyma08g15560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g15560.1 sequence type=predicted peptide gene model=Glyma08g15560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDADLKSAKAAYRNAKAEGNHREEARWANVIGDILKNRGEYVQALKWLRIDYEISLKHLPEKHLLPTCQSLGEMYLRLEHFSDALIYQKKHLDLARDAGDVVEQQRASTQLGRTYHELFSRSEHDHNSIRNAKKYFKSAMDLAVKLQENPPNSKSSFLKEYIDAHNNIGMLEMDLDNLHEARKILTRGLEICNDEEVAEFDDGRSRLHHNLGNVYMELRDWDKARKHIRTDIVICNRIGHVQGEAKGYINLGEVNYRTQKYEDASAYYEKALGLAKSLEDEDALVRQIEQNIETVREAVKVMADIKKEEQSLKKLKRDIATARGTPNERKFLLQQNAVLERLVEKARMISAWEKHCEFAKEKKKIASELCDRQRLADSYLDVAESYHKLRKFNKAIKWYKKSWEMYKNIGNLEGQAMVKINIGNVYDSTESWRKALDAFQESYSIAVEADLPDVQLAALENMHYSNMIRFDDEDETRRLNLLIDKLKKLEEKEAEAKSMPEDFCSETDTEADECLSNSGSDDFCFPKTISRSKTLTTGEELKEDAPLMSLYQSLKGSSKKKAGHKESLANSTKQDEHSPSSLKNQTSDHQTVVGRKRVRVILSDDDDDEVECSSRKDHNCPVEDLPTYDAIKSKASPCKFQVISENGSKTAINVEESSSSFKCWSPHRATKSGRHSRSFSNDIVAEPDFPGGSKCDTDVSGKQNDITQPMLHHSQNDLQQYVTCRIGNDLIRVEASLCTTGDQLNIDSLKAVVACLYYLQFPTEKRSEGLLPIIEHIKCAGRDLESLETVEHLKEVLGNDMVEASVDGWIHKGLIKMYVDHCKELSEVPNIKVLKKLYNLEVSDDEIVVSDCDLQDLSITPLINALHSQKSFAMLDLSHNLLGNGTIEKLQKVFTASGQSYGGLTLDLHCNRFGPTSLFQICECSLLFDRLEVLNISGNRLTDACGSYLSTILKNCTALCSLNIENCCVTSRTIQKVADALDSTSVLAHLCIGYNSPVSGNAIVNLVSKLSTLKRFSELNMSGLKLGKPVVDTLCKLAGTLNLSGLILGGTGVGTEGAIKLAESLLQGTEELVKLDLSYCGLTFNFVLNTSVNFFCSILELNLEGNPIMPEGSNTLFSLLVNPQCCLKVLVLKKCQLGLAGILHIIEALAENSCLEELNVANNSIPKEVSALQYDLSVKSCSQNQEQKLDTMKVDDNQEVLGSLNSADHLLEVADSEDVPVETAASGFDDSCASSCQRNSSPECHFTQQFSIAIGKAKNLQLLDLSNNGFSAQAAEAFYGSWATLRPLSSQNHITEQIIHFSTRENKCCRVKPCCKKV*