Glyma08g15560 - SoyBase

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Report for Sequence Feature Glyma08g15560

Feature Type:	gene_model
Chromosome:	Gm08
Start:	11281446
stop:	11292756
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g15560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18730	AT	Annotation by Michelle Graham. TAIR10: tetratricopeptide repeat (TPR)-containing protein \| chr3:6446062-6453045 REVERSE LENGTH=1311	SoyBase	E_val: 0	ISS
GO:0000086	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2/M transition of mitotic cell cycle	SoyBase	N/A	ISS
GO:0009933	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem structural organization	SoyBase	N/A	ISS
GO:0009934	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem structural organization	SoyBase	N/A	ISS
GO:0051301	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell division	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1909	KOG	Ran GTPase-activating protein	JGI		ISS
PTHR10098	Panther	RAPSYN	JGI		ISS
PTHR10098:SF8	Panther	RAPSYNOID	JGI		ISS
UniRef100_G7LD57	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein BRUSHY n=1 Tax=Medicago truncatula RepID=G7LD57_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023389FE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023389FE related cluster n=1 Tax=unknown RepID=UPI00023389FE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g15560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g15560

Paralog	Evidence	Comments
Glyma05g32290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g15560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g147000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g15560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g15560

Limit To All Plant Sequences

>Glyma08g15560.1   sequence type=CDS   gene model=Glyma08g15560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGCGGATCTGAAGTCGGCGAAGGCGGCGTACCGGAACGCCAAGGCGGAGGGAAACCACCGAGAGGAGGCGCGGTGGGCCAACGTCATCGGCGACATACTCAAAAACCGAGGAGAGTACGTCCAAGCCCTCAAATGGCTCCGAATCGATTACGAAATTTCGCTCAAACACTTACCGGAAAAGCATTTGCTCCCAACTTGTCAATCCCTTGGCGAAATGTATCTCCGCCTCGAACACTTCTCCGATGCCCTAATTTATCAGAAAAAGCATTTAGATCTTGCGAGGGACGCTGGCGACGTCGTTGAGCAACAGCGGGCGAGCACGCAACTCGGTCGCACTTACCACGAGCTCTTCTCGCGATCGGAGCACGACCACAACTCAATTCGCAACGCGAAGAAGTACTTCAAGTCCGCGATGGATCTCGCGGTGAAGCTCCAGGAGAATCCTCCAAACAGCAAGTCCTCTTTTCTCAAGGAGTACATCGACGCGCACAACAACATAGGCATGCTGGAGATGGATCTCGACAACTTGCATGAGGCGCGGAAGATTTTAACTAGAGGATTGGAGATTTGTAATGACGAGGAGGTCGCTGAATTCGATGATGGCCGCAGTAGACTCCACCACAACCTTGGGAATGTGTATATGGAACTTAGGGATTGGGATAAAGCTAGGAAACACATTAGAACGGATATTGTGATTTGTAACAGAATTGGACATGTTCAAGGGGAAGCCAAGGGGTATATTAATCTTGGTGAAGTGAATTACAGGACTCAGAAGTATGAAGATGCAAGTGCTTATTACGAGAAGGCGCTTGGTTTGGCAAAGAGCTTGGAGGATGAGGATGCTTTGGTAAGGCAAATCGAGCAGAATATTGAAACTGTGAGAGAAGCTGTTAAGGTAATGGCTGATATAAAGAAAGAGGAGCAGAGCCTTAAGAAGCTCAAAAGAGATATAGCCACTGCCAGAGGGACACCAAATGAGCGCAAATTCTTGCTGCAGCAGAATGCAGTTCTTGAGCGTTTGGTTGAGAAAGCAAGGATGATCTCTGCGTGGGAGAAGCATTGTGAATTTGCAAAGGAGAAGAAGAAAATAGCAAGTGAACTCTGTGATAGGCAGAGACTGGCTGATTCATATCTGGATGTTGCAGAATCATACCATAAACTCAGAAAATTCAACAAAGCAATCAAGTGGTACAAAAAGAGTTGGGAAATGTACAAAAATATTGGTAACTTAGAGGGGCAAGCAATGGTGAAAATTAATATTGGTAATGTTTATGATTCTACTGAAAGTTGGAGAAAAGCATTGGATGCATTTCAAGAGAGCTACAGTATCGCTGTTGAAGCAGACCTCCCTGATGTGCAACTCGCTGCCTTGGAAAATATGCATTATAGCAACATGATAAGATTTGATGATGAGGATGAGACAAGGAGGTTGAATCTTCTAATTGATAAGCTGAAGAAATTAGAAGAAAAAGAGGCAGAAGCTAAAAGTATGCCAGAGGATTTTTGCTCTGAAACTGATACTGAAGCAGATGAGTGTCTGTCAAACAGTGGGTCTGATGATTTTTGCTTTCCAAAGACAATTTCTCGATCAAAAACTCTGACTACTGGAGAAGAATTGAAAGAGGACGCACCTCTTATGTCACTCTATCAGTCCTTAAAAGGCTCATCCAAAAAGAAAGCAGGCCACAAAGAAAGTCTTGCCAACTCTACCAAGCAAGATGAGCATTCACCCAGTAGTCTGAAAAATCAAACCAGTGATCATCAGACAGTTGTTGGTCGTAAACGTGTCCGTGTAATTCTTTCTGATGATGATGATGATGAAGTCGAGTGTTCAAGCAGAAAGGATCATAATTGCCCGGTAGAGGACTTGCCCACTTATGATGCCATTAAGAGTAAAGCCAGTCCTTGTAAATTTCAGGTTATCTCAGAAAATGGATCCAAGACTGCAATTAATGTTGAAGAAAGTAGTAGTTCTTTCAAATGTTGGAGTCCACATAGAGCCACAAAATCTGGCAGACATTCCAGGTCTTTTAGCAATGATATAGTTGCTGAACCTGATTTTCCTGGTGGTTCTAAATGTGACACTGATGTCTCTGGCAAACAAAATGATATTACCCAGCCTATGTTGCATCATTCCCAAAATGACCTCCAGCAATATGTTACATGCCGGATTGGGAATGACCTAATACGTGTAGAAGCATCCTTGTGTACCACTGGTGACCAGTTGAACATTGACTCTTTGAAGGCTGTAGTTGCTTGCTTATATTATCTACAATTTCCAACTGAAAAGAGATCAGAGGGTTTGTTGCCCATTATTGAGCATATAAAATGTGCTGGAAGAGATCTAGAATCCCTGGAAACTGTTGAACATCTTAAGGAAGTTTTGGGAAATGACATGGTTGAAGCTTCCGTTGATGGATGGATTCACAAGGGCCTGATAAAAATGTATGTAGACCACTGCAAGGAGTTGTCAGAGGTACCGAACATCAAGGTATTGAAGAAGCTTTACAATTTAGAGGTTTCAGATGACGAAATTGTTGTGTCTGACTGCGACCTTCAAGACTTGTCTATTACACCATTGATAAATGCACTGCATTCTCAAAAGTCATTTGCAATGCTTGACCTCTCTCACAATTTGTTAGGAAATGGAACAATCGAGAAACTGCAAAAGGTGTTCACAGCATCAGGACAATCTTATGGTGGCTTAACTCTGGATTTGCATTGCAATCGATTTGGCCCAACATCATTGTTTCAGATTTGTGAATGTTCACTGCTATTTGATCGACTAGAAGTGCTTAACATTTCTGGAAACCGTCTTACTGATGCATGTGGATCTTATCTTTCAACAATATTAAAAAACTGTACAGCTCTTTGTAGCTTGAATATAGAGAACTGTTGTGTCACATCCAGAACTATTCAAAAAGTTGCGGATGCATTGGACTCTACATCTGTTCTTGCCCATCTATGTATAGGATACAACAGCCCTGTATCTGGAAATGCTATAGTTAATCTTGTGTCCAAGCTTTCTACTCTGAAAAGGTTTTCTGAGTTGAATATGAGTGGTCTAAAACTAGGCAAACCAGTTGTCGATACCCTTTGCAAGCTTGCAGGGACCTTAAATTTGTCAGGACTAATACTTGGAGGCACGGGTGTTGGAACTGAAGGGGCAATTAAATTAGCAGAATCATTGCTCCAAGGGACTGAAGAGCTTGTGAAACTTGACCTATCATATTGTGGTCTAACATTTAACTTTGTTTTAAACACCAGTGTTAATTTTTTTTGTTCCATCCTAGAGCTGAACCTGGAAGGAAATCCTATCATGCCTGAGGGCAGCAATACTTTATTTTCTCTTCTTGTAAACCCACAGTGCTGTCTCAAAGTTTTGGTCCTTAAAAAGTGTCAACTTGGGCTTGCAGGAATTCTTCACATAATCGAGGCTCTGGCAGAGAACAGCTGCCTTGAGGAACTTAATGTTGCTAATAATTCTATTCCGAAGGAAGTTTCTGCTCTACAATATGATTTATCGGTAAAAAGCTGCTCACAAAACCAGGAGCAGAAACTTGATACTATGAAAGTTGATGATAATCAAGAGGTCCTTGGCTCTCTAAACAGTGCCGACCATCTACTGGAAGTTGCTGATAGTGAAGATGTTCCAGTAGAAACAGCTGCTTCTGGATTTGACGACAGCTGTGCCAGTTCATGTCAAAGAAATTCATCTCCCGAGTGCCATTTCACGCAACAGTTTTCAATTGCTATTGGTAAGGCAAAGAACTTGCAATTACTAGACCTTAGCAATAACGGTTTTTCTGCACAAGCTGCGGAAGCATTCTATGGTTCGTGGGCGACTTTACGGCCCCTTTCAAGTCAAAACCACATTACTGAGCAGATAATTCACTTCTCAACGAGGGAAAATAAGTGCTGTAGAGTGAAACCTTGCTGCAAGAAAGTTTGA

Predicted protein sequences of Glyma08g15560

Limit To All Plant Sequences

>Glyma08g15560.1   sequence type=predicted peptide   gene model=Glyma08g15560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDADLKSAKAAYRNAKAEGNHREEARWANVIGDILKNRGEYVQALKWLRIDYEISLKHLPEKHLLPTCQSLGEMYLRLEHFSDALIYQKKHLDLARDAGDVVEQQRASTQLGRTYHELFSRSEHDHNSIRNAKKYFKSAMDLAVKLQENPPNSKSSFLKEYIDAHNNIGMLEMDLDNLHEARKILTRGLEICNDEEVAEFDDGRSRLHHNLGNVYMELRDWDKARKHIRTDIVICNRIGHVQGEAKGYINLGEVNYRTQKYEDASAYYEKALGLAKSLEDEDALVRQIEQNIETVREAVKVMADIKKEEQSLKKLKRDIATARGTPNERKFLLQQNAVLERLVEKARMISAWEKHCEFAKEKKKIASELCDRQRLADSYLDVAESYHKLRKFNKAIKWYKKSWEMYKNIGNLEGQAMVKINIGNVYDSTESWRKALDAFQESYSIAVEADLPDVQLAALENMHYSNMIRFDDEDETRRLNLLIDKLKKLEEKEAEAKSMPEDFCSETDTEADECLSNSGSDDFCFPKTISRSKTLTTGEELKEDAPLMSLYQSLKGSSKKKAGHKESLANSTKQDEHSPSSLKNQTSDHQTVVGRKRVRVILSDDDDDEVECSSRKDHNCPVEDLPTYDAIKSKASPCKFQVISENGSKTAINVEESSSSFKCWSPHRATKSGRHSRSFSNDIVAEPDFPGGSKCDTDVSGKQNDITQPMLHHSQNDLQQYVTCRIGNDLIRVEASLCTTGDQLNIDSLKAVVACLYYLQFPTEKRSEGLLPIIEHIKCAGRDLESLETVEHLKEVLGNDMVEASVDGWIHKGLIKMYVDHCKELSEVPNIKVLKKLYNLEVSDDEIVVSDCDLQDLSITPLINALHSQKSFAMLDLSHNLLGNGTIEKLQKVFTASGQSYGGLTLDLHCNRFGPTSLFQICECSLLFDRLEVLNISGNRLTDACGSYLSTILKNCTALCSLNIENCCVTSRTIQKVADALDSTSVLAHLCIGYNSPVSGNAIVNLVSKLSTLKRFSELNMSGLKLGKPVVDTLCKLAGTLNLSGLILGGTGVGTEGAIKLAESLLQGTEELVKLDLSYCGLTFNFVLNTSVNFFCSILELNLEGNPIMPEGSNTLFSLLVNPQCCLKVLVLKKCQLGLAGILHIIEALAENSCLEELNVANNSIPKEVSALQYDLSVKSCSQNQEQKLDTMKVDDNQEVLGSLNSADHLLEVADSEDVPVETAASGFDDSCASSCQRNSSPECHFTQQFSIAIGKAKNLQLLDLSNNGFSAQAAEAFYGSWATLRPLSSQNHITEQIIHFSTRENKCCRVKPCCKKV*

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