Glyma08g15500 - SoyBase

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Report for Sequence Feature Glyma08g15500

Feature Type:	gene_model
Chromosome:	Gm08
Start:	11255588
stop:	11261588
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g15500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18770	AT	Annotation by Michelle Graham. TAIR10: Autophagy-related protein 13 \| chr3:6460026-6462510 REVERSE LENGTH=625	SoyBase	E_val: 7.00E-146	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG4573	KOG	Phosphoprotein involved in cytoplasm to vacuole targeting and autophagy	JGI		ISS
PF10033	PFAM	Autophagy-related protein 13	JGI		ISS
UniRef100_Q9LSA0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Emb\|CAB62463.1 n=2 Tax=Arabidopsis thaliana RepID=Q9LSA0_ARATH	SoyBase	E_val: 2.00E-142	ISS
UniRef100_UPI0002337F6E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337F6E related cluster n=1 Tax=unknown RepID=UPI0002337F6E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g15500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g15500

Paralog	Evidence	Comments
Glyma05g32250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g15500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g146700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g15500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g15500

Limit To All Plant Sequences

>Glyma08g15500.2   sequence type=CDS   gene model=Glyma08g15500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCGTCTCATGGTAATGCCCACTCGGATGCTGCAAAGATGGAACAAATAATCACCGAGTTCTTCGCCAAGAGCCTGCACATAATACTCGAATCAAGGGCACTCTATGTGTCCTCACGCAATTCCTATGGTGATCAAGCTGTTTCGTCTCCGTGTTCGTCGTCTTCATCTTCGTCGAGTGTGCGGCCGAGGGATAAGTGGTTCAATTTGGCTCTCCGGGAGTGCCCGGCGGCGCTGGAGAACATTGACCTCTGGCGCCAGAACAATCTTGAGTGCATAGTGATAGATGTGATTTTGGTGCAGAGGCCTCTGGATTGGGATCCTGTGACTGTGAGTTTTTCTCCAAAGAGGGTTCTTCCTAGGAGTTCTTCACTGAAGGAAAGATGCCCTTTTGGCTGGAACACTGATCAGGAAGAATTGGGGGTTGTGGGAAGGAGTGAAAAGATTGTGGAGAGGTGGCTTGTGCAGTATGAGAGTAGGAAGACAAGGGATTCTAATTCTGGCAGTAGGAGATCAAGCAATGTTTCTTTACATAACTTGTATAAGAAATCAACTTTGCTTCTGAGGTCTTTGTATGCCACTGTTAGACTTTTACCTGCCTATAAACTTTTCCGAGAGCTTAATTCGTCTGGACAGATTAGGGACTTTACCCTTGGTCACCGTGTGTCTTCTTTTGTTGAGCCCTTCACCCGGAAACAAGAGGCTGAAATGATGAAATTCGGGTTCACCCCTGTGGATACTTCTTCTGGTAGGCTGTGTCTCAGTGTGATGTATTGCCCCTCAGCATCAGATGTGAGTTCTGAACCTTCCACTCCGATGTCCCCACAAGTTATAACTGATTATGTTGGGAGTCCATTGGCTGATCCATTAAGGAGGTTTCCTTCTCTTCCTGTGGCAGGTTTGCCATCTTCAAGGCAGCGTAGTTGGAGTTTCGATCATTATAGAGCCTCACCTCCTTCTTATTTACCTTCGCCTACTCATTCAGAATCACTCTCGTCAGGGTATAATGCATGTTTGCGGCGTTTCCCCCCTGCAAGTTTGCCTCCTCATCCATCTGAGATGTCTTTGATTCAGAAGAAGAATACAAATTTTGATGATTATTATCCCTCTGCATCACCTTCAACCTCTAATTCTGGGCCGTTACCATGCAAACCCCTTTTACGATCTGAAAGTGCTCCAGTCAGCATACCTACTGCTGAAGTTGATAATTCCCCTGGATACTCCAATAGGCATAATTTGCCTCCATCTCCTCCCCTAAGAATTTCGAGGGGCATTGGTAAGATTGATAAAAACCCAATGCAAACAGGAGCAACAGCTGAGAAGTTGTTTTCTCTTGGAAAAGACGAGTCTCGAAAATATTCTGGAGTGAAGATATCAGCTAACAGCTCGCCCCAGATTTCAATTTCCAGAAGCTCAAGTAGGTCTTATCAGGATGATTTTGATGATACTGATTTTACTTGTCCATTTGATGTGGATGATGATGATATGACAGATCCAGGAAGCAGAGCTGAATCTCTGGATCACGGTCATATAGCTGAGACGCTTGAAGCTGGAGGATTCTTTCCCATTAGAAAGTCTCAAGATGCTGCTGTTGGTGCGCTTGTACATATGCTGAAGAAAGCGCCACCTCTGCATCAAGATTTCTCCACCTCACAACACCTCTCACAAGGTGCATACCCTGAAACCTGGAAAAATAACACTCAAGGGACCAATCAGATCCTAGAGGCATCATCAAGGCCAGTGAGCATAATGTCTTCTGGGATCATAGCTACTAGGAAAACAACAGCTGATGCATTGGAAGAGTTCCATGGTTACAAAGAGATGAAAAACTTGTTGCTTAGGCGAGGTAGTAGTAAGCACCAGAAATAA

Predicted protein sequences of Glyma08g15500

Limit To All Plant Sequences

>Glyma08g15500.2   sequence type=predicted peptide   gene model=Glyma08g15500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSHGNAHSDAAKMEQIITEFFAKSLHIILESRALYVSSRNSYGDQAVSSPCSSSSSSSSVRPRDKWFNLALRECPAALENIDLWRQNNLECIVIDVILVQRPLDWDPVTVSFSPKRVLPRSSSLKERCPFGWNTDQEELGVVGRSEKIVERWLVQYESRKTRDSNSGSRRSSNVSLHNLYKKSTLLLRSLYATVRLLPAYKLFRELNSSGQIRDFTLGHRVSSFVEPFTRKQEAEMMKFGFTPVDTSSGRLCLSVMYCPSASDVSSEPSTPMSPQVITDYVGSPLADPLRRFPSLPVAGLPSSRQRSWSFDHYRASPPSYLPSPTHSESLSSGYNACLRRFPPASLPPHPSEMSLIQKKNTNFDDYYPSASPSTSNSGPLPCKPLLRSESAPVSIPTAEVDNSPGYSNRHNLPPSPPLRISRGIGKIDKNPMQTGATAEKLFSLGKDESRKYSGVKISANSSPQISISRSSSRSYQDDFDDTDFTCPFDVDDDDMTDPGSRAESLDHGHIAETLEAGGFFPIRKSQDAAVGALVHMLKKAPPLHQDFSTSQHLSQGAYPETWKNNTQGTNQILEASSRPVSIMSSGIIATRKTTADALEEFHGYKEMKNLLLRRGSSKHQK*

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