Report for Sequence Feature Glyma08g15450
Feature Type: gene_model
Chromosome: Gm08
Start: 11214876
stop: 11218970
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g15450
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
UniRef100_J8RQF7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: LPXTG-domain-containing protein cell wall anchor domain (Fragment) n=1 Tax=Bacillus cereus BAG2X1-2 RepID=J8RQF7_BACCE
SoyBase E_val: 4.00E-06 ISS
UniRef100_UPI0002337F6C UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002337F6C related cluster n=1 Tax=unknown RepID=UPI0002337F6C
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g15450
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g15450
Paralog Evidence Comments
Glyma05g32160 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g15450 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g146200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g15450
Coding sequences of Glyma08g15450
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g15450.2 sequence type=CDS gene model=Glyma08g15450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAGGATGTGCAACGAAGCCGAAGGTCTCCAAGGACGATCCCGATGGAATGCCCAAGGCACCCCAACCAGAACCCCAACCTGAACTCCAACCCAACAAGGACACCCTTAAAACCAAAGCACCCGCCGCCCAAGTGGAACAAGCTGCTGCTGCTCACAACAACAACCTTAATGTCAACGAAATTGTTGACGACGACCAAGCCAACAAACGACGCTCTCTCAGCTTCTTGTTCAAGGAGAATGAAGATAAAAAGGGTTCCACAGAAAATGAGAAAAATACAGTTGAGGAATCTGTGAAAGAAGAAGTGTTAGAGGTCAAGAAACCTGCGGAAGATGCTAAAAGCAATGAGCCAATAGTTAAGCAAGAATCTCCAAGGCCAGATGAGAAGCTGTCTGAGGAGAGTAGAAACAATGAATCATCAAAGCAAGAAAACGAGACTTTGAAGACAGAAACATCACATGCTGAGGAAACTCATGTCAATGAACCAGCTAAGGAAACAGTGAAACTAGAGCCAGAGGCTCAGAAACCTTCAGAGGAAACTCTTGCCATTGAACCAGCTAAGGAAACATTGATAATAGAGTCAGAAACTAAGAAACCTTCAGAGGAAACTCTTATCGTTGAACCAGCTAAGGAAACGGTGATAGTAGAGTCAGAAGCTAGGAAACCTTCAGAGGAAACTCTTATCAATGAACCAGCCAAGGAAACAGTGATAGTAGAGTCAGAAGCTAGGAAACCTTCAGAGGAAACTCTTATCAATGAACCAGCTAAGGAAACAGTGATAGTAGAGTCAGAAGCTCAGAAACCTTTAGAGGAAACTCATATCAATGAACCAGCTAAGAAAACAGTGAAACCAGATTCAGAAGCTGAGAAACCTTCAGAGGTAAACAATGAAAGCAGCAAGCCACTGAACGAAGAATTTGTACAGGCCATGGAGATACTTTCAGAGGAAACACAAAGCAATGGACTCATCAAACTCAAAGAAGTGCCTATTGAACCATCAGAAGAAGGTAAGCCAAGTGGGGAATCAGAGAGGAATGCTTCAGAAACTGAAAAACCTGAAACTTCCATTGTGACTGAGGTGGTTCCTATGCCTGAGGAGAGAGTAATTGAAGAAATTCCAACTGATGCAAAGTCTGTAGAGAAGGTAACAAAGGAAGCTGCATCAAGCACAGAAGAGACAAGCCATAATGGGGTGGAGAATGCACCTAAGGTTGTTGATGCTGGAACTGAGATTCACTAA
Predicted protein sequences of Glyma08g15450
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g15450.2 sequence type=predicted peptide gene model=Glyma08g15450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGGCATKPKVSKDDPDGMPKAPQPEPQPELQPNKDTLKTKAPAAQVEQAAAAHNNNLNVNEIVDDDQANKRRSLSFLFKENEDKKGSTENEKNTVEESVKEEVLEVKKPAEDAKSNEPIVKQESPRPDEKLSEESRNNESSKQENETLKTETSHAEETHVNEPAKETVKLEPEAQKPSEETLAIEPAKETLIIESETKKPSEETLIVEPAKETVIVESEARKPSEETLINEPAKETVIVESEARKPSEETLINEPAKETVIVESEAQKPLEETHINEPAKKTVKPDSEAEKPSEVNNESSKPLNEEFVQAMEILSEETQSNGLIKLKEVPIEPSEEGKPSGESERNASETEKPETSIVTEVVPMPEERVIEEIPTDAKSVEKVTKEAASSTEETSHNGVENAPKVVDAGTEIH*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
