Glyma08g15440 - SoyBase

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Report for Sequence Feature Glyma08g15440

Feature Type:	gene_model
Chromosome:	Gm08
Start:	11208558
stop:	11213188
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g15440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64700	AT	Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein \| chr5:25865190-25866845 REVERSE LENGTH=359	SoyBase	E_val: 4.00E-130	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
UniRef100_G7LC96	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4 n=2 Tax=Medicago truncatula RepID=G7LC96_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337F6B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337F6B related cluster n=1 Tax=unknown RepID=UPI0002337F6B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g15440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g15440

Paralog	Evidence	Comments
Glyma05g32150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g15440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g146100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g15440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g15440

Limit To All Plant Sequences

>Glyma08g15440.2   sequence type=transcript   gene model=Glyma08g15440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGAACATGTAAAAGCAGCTTATCATCCTCACCACACACGTCCCCATAATACAAAGACAAGAGCCAATGACAATGTGCTCCTCAGTCCTCACACTACTTTCACCAATATCTCCATTGCCCATAAAAAGGTGGAACTTAATTGTGTGTCATCAACTACTGTGAACCATCTTTCACAATTCATTAACTTTGGAGCCTAAATTAGGTCATTAATCAAAGCCATGAAAGGAAGCAAGAAGCCTTATCTAGTTGTGATCCTCATAGAAGCCATCTATGCTGCCATGTTTCTGCTCTCAAAAGCTGCATTTGACCATGGCATGAACAATTTCATCTTTGTCTTCTATAGACAGACAACAGCCACCATATTCCTTATCCCTTTTGCTTTCTTCTTTGAATGCAGGAAAACTGCACCTCCTTTGACCTTGGTGACCTTCTGCAAGATCTTTTTCCTTTCTTTCCTGGGGATCAGTGCGAGCTTGGACATATATGGTATTGGACTTATTTACACTTCTGCTACTTTAGCTGCTGCTACCACAAACTGCCTTCCAGTCATCACCTTCTTCTTGGCGCTCATACTCAGGATAGAAAATTTGAAAGTAACGAGTACCTCGGGGGTTGCTAAGTTGGTTGGTGTAGTGGCATGCTTGACGGGATCAGCAATTCTTGCTTTCTATAAAGGTCCTCATTTAGAAGTTTTAAGCCATTATCACGTTTTAGGGTACCATAAAAACCAACAACATCTGGGTCGTGTTGCATCTGGGACATGGATTAAGGGTTGCTTCCTCTTGCTACTCTCCAACACCTTTTGGGGAATGTGGCTTGTGCTACAGACTTATGTCATAAAAGGATACCCTTCAAAGCTGCTCCTCACAACTCTTCAGTGTTTCTTAAGCTCGATTCAGTCTTTGGGCATTGCCTTGGCCGTAGAAAGAGATATTGAGCAATGGAAGTTGGGATGGAATGTCAGACTCCTTGCCGTAGTATATTGTGGAATCATGGTGACCGGTGTAACATATTACTTACAAACATGGGTTATAGAGAAGAAAGGACCGGTGTTTCTAGCCATGGCAACACCACTTGCTTTGATCATGACCATCTTCTCCTCCGCAGTTCTCTTGGGCGAGATCATAACTTTGGGAAGCCTTTTAGGTGGCATCGCTTTGGTCATTGGACTGTACTGCGTGCTGTGGGGAAAGAGCAGAGAGCAAATGCCAAAAGCCTCGTTAGACTTGGAGGAGGCATCATCGGGTTAGAGTGGAGCTAGTGATTCACAAATCACAATTGTCATGACACGACACCTGATATATAAAGGAACATTAACTGTATGTAGTTTGGAATAGTGCCAAAATTATGTTAATAATATATATAATATATAAGCCTGTGGAGATGTTCGAAAACCCAAAGGCAGAATCTCTGAAGTCCACCTCTTCTCAAATTATGTCCTTCCGATAATGTTAGGCTTCATATTGTAGGAACTAACTAGGGAGGCTTTTAAATTTTCTCTCTTTTGTACTGGGTTGGTTTCGAAAACAACTTGATATTATAGGGACTAAAGTATATTTAAGATCAACTTATAA

Coding sequences of Glyma08g15440

Limit To All Plant Sequences

>Glyma08g15440.1   sequence type=CDS   gene model=Glyma08g15440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGGAAGCAAGAAGCCTTATCTAGTTGTGATCCTCATAGAAGCCATCTATGCTGCCATGTTTCTGCTCTCAAAAGCTGCATTTGACCATGGCATGAACAATTTCATCTTTGTCTTCTATAGACAGACAACAGCCACCATATTCCTTATCCCTTTTGCTTTCTTCTTTGAATGGAAAACTGCACCTCCTTTGACCTTGGTGACCTTCTGCAAGATCTTTTTCCTTTCTTTCCTGGGGATCAGTGCGAGCTTGGACATATATGGTATTGGACTTATTTACACTTCTGCTACTTTAGCTGCTGCTACCACAAACTGCCTTCCAGTCATCACCTTCTTCTTGGCGCTCATACTCAGGATAGAAAATTTGAAAGTAACGAGTACCTCGGGGGTTGCTAAGTTGGTTGGTGTAGTGGCATGCTTGACGGGATCAGCAATTCTTGCTTTCTATAAAGGTCCTCATTTAGAAGTTTTAAGCCATTATCACGTTTTAGGGTACCATAAAAACCAACAACATCTGGGTCGTGTTGCATCTGGGACATGGATTAAGGGTTGCTTCCTCTTGCTACTCTCCAACACCTTTTGGGGAATGTGGCTTGTGCTACAGACTTATGTCATAAAAGGATACCCTTCAAAGCTGCTCCTCACAACTCTTCAGTGTTTCTTAAGCTCGATTCAGTCTTTGGGCATTGCCTTGGCCGTAGAAAGAGATATTGAGCAATGGAAGTTGGGATGGAATGTCAGACTCCTTGCCGTAGTATATTGTGGAATCATGGTGACCGGTGTAACATATTACTTACAAACATGGGTTATAGAGAAGAAAGGACCGGTGTTTCTAGCCATGGCAACACCACTTGCTTTGATCATGACCATCTTCTCCTCCGCAGTTCTCTTGGGCGAGATCATAACTTTGGGAAGCCTTTTAGGTGGCATCGCTTTGGTCATTGGACTGTACTGCGTGCTGTGGGGAAAGAGCAGAGAGCAAATGCCAAAAGCCTCGTTAGACTTGGAGGAGGCATCATCGGGTTAG

>Glyma08g15440.2   sequence type=CDS   gene model=Glyma08g15440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGGAAGCAAGAAGCCTTATCTAGTTGTGATCCTCATAGAAGCCATCTATGCTGCCATGTTTCTGCTCTCAAAAGCTGCATTTGACCATGGCATGAACAATTTCATCTTTGTCTTCTATAGACAGACAACAGCCACCATATTCCTTATCCCTTTTGCTTTCTTCTTTGAATGCAGGAAAACTGCACCTCCTTTGACCTTGGTGACCTTCTGCAAGATCTTTTTCCTTTCTTTCCTGGGGATCAGTGCGAGCTTGGACATATATGGTATTGGACTTATTTACACTTCTGCTACTTTAGCTGCTGCTACCACAAACTGCCTTCCAGTCATCACCTTCTTCTTGGCGCTCATACTCAGGATAGAAAATTTGAAAGTAACGAGTACCTCGGGGGTTGCTAAGTTGGTTGGTGTAGTGGCATGCTTGACGGGATCAGCAATTCTTGCTTTCTATAAAGGTCCTCATTTAGAAGTTTTAAGCCATTATCACGTTTTAGGGTACCATAAAAACCAACAACATCTGGGTCGTGTTGCATCTGGGACATGGATTAAGGGTTGCTTCCTCTTGCTACTCTCCAACACCTTTTGGGGAATGTGGCTTGTGCTACAGACTTATGTCATAAAAGGATACCCTTCAAAGCTGCTCCTCACAACTCTTCAGTGTTTCTTAAGCTCGATTCAGTCTTTGGGCATTGCCTTGGCCGTAGAAAGAGATATTGAGCAATGGAAGTTGGGATGGAATGTCAGACTCCTTGCCGTAGTATATTGTGGAATCATGGTGACCGGTGTAACATATTACTTACAAACATGGGTTATAGAGAAGAAAGGACCGGTGTTTCTAGCCATGGCAACACCACTTGCTTTGATCATGACCATCTTCTCCTCCGCAGTTCTCTTGGGCGAGATCATAACTTTGGGAAGCCTTTTAGGTGGCATCGCTTTGGTCATTGGACTGTACTGCGTGCTGTGGGGAAAGAGCAGAGAGCAAATGCCAAAAGCCTCGTTAGACTTGGAGGAGGCATCATCGGGTTAG

Predicted protein sequences of Glyma08g15440

Limit To All Plant Sequences

>Glyma08g15440.1   sequence type=predicted peptide   gene model=Glyma08g15440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGSKKPYLVVILIEAIYAAMFLLSKAAFDHGMNNFIFVFYRQTTATIFLIPFAFFFEWKTAPPLTLVTFCKIFFLSFLGISASLDIYGIGLIYTSATLAAATTNCLPVITFFLALILRIENLKVTSTSGVAKLVGVVACLTGSAILAFYKGPHLEVLSHYHVLGYHKNQQHLGRVASGTWIKGCFLLLLSNTFWGMWLVLQTYVIKGYPSKLLLTTLQCFLSSIQSLGIALAVERDIEQWKLGWNVRLLAVVYCGIMVTGVTYYLQTWVIEKKGPVFLAMATPLALIMTIFSSAVLLGEIITLGSLLGGIALVIGLYCVLWGKSREQMPKASLDLEEASSG*

>Glyma08g15440.2   sequence type=predicted peptide   gene model=Glyma08g15440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGSKKPYLVVILIEAIYAAMFLLSKAAFDHGMNNFIFVFYRQTTATIFLIPFAFFFECRKTAPPLTLVTFCKIFFLSFLGISASLDIYGIGLIYTSATLAAATTNCLPVITFFLALILRIENLKVTSTSGVAKLVGVVACLTGSAILAFYKGPHLEVLSHYHVLGYHKNQQHLGRVASGTWIKGCFLLLLSNTFWGMWLVLQTYVIKGYPSKLLLTTLQCFLSSIQSLGIALAVERDIEQWKLGWNVRLLAVVYCGIMVTGVTYYLQTWVIEKKGPVFLAMATPLALIMTIFSSAVLLGEIITLGSLLGGIALVIGLYCVLWGKSREQMPKASLDLEEASSG*

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