Glyma08g15300 - SoyBase

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Report for Sequence Feature Glyma08g15300

Feature Type:	gene_model
Chromosome:	Gm08
Start:	11088502
stop:	11091887
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g15300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39380	AT	Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: TSL-kinase interacting protein 1 (TAIR:AT2G36960.3); Has 80 Blast hits to 74 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). \| chr4:18309628-18311874 REVERSE LENGTH=518	SoyBase	E_val: 5.00E-51	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7LC60	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TSL-kinase interacting protein n=1 Tax=Medicago truncatula RepID=G7LC60_MEDTR	SoyBase	E_val: 2.00E-161	ISS
UniRef100_I1KTC9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KTC9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g15300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g15300

Paralog	Evidence	Comments
Glyma05g31970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g15300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g144600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g15300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g15300

Limit To All Plant Sequences

>Glyma08g15300.2   sequence type=CDS   gene model=Glyma08g15300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAACAGGTAGATCACTAGACAGGAAAGTTGTGAAGGCTTCTGGAAAGTGCAATCCAAAGACAGGATTCATTGGAGTGAGAAATTCGCCCAAAAGAACAAATAAATTGGATCAAAAAGCAAGAGGATGCGGTCAGGAGTTGACTGATAAAGAGAATCAGTATTTTCCATTTAAGGAACATATGAGAAAGTGCCCAGAACTTCCCAACAAGTGTACTTTTCTTACAGAAAAGAGAGAGGCTATTGAACTTCATCCTGGACAAATGCTCACTTCCGCAAAAATCAAGTTACAACTTTTTCCAATTAATGAAGGAACTCGGATAGGACTTGAAAAGGATGGGCATAATCCTTATTTAGAACTCACACTTAGAGGTCGAAAGAAAATATGTTCAATACTAAAACACCTTGGAAAGAAGTGGGGAAGTTCAAGTATAGCCAAAGGGGAGCTTATGCTTTTTCCATATAATATAATGGAAAATCTATCTGGCTGCAGAAGGTGGACAATTAATGATAGTGACACAACAGCCTCTGCTGTTTATACTGCTGTTGGAAGCCCTGCACTCTTCCGGTTGAAGTATGGCTGGTTCTACATGCTTGAACCCGGGTCTTTTGGTATACCTTCCACACCAACTCCCGATAAGCCTGATGTAGCTGGAAGCGGCAATGCTAATTTAGAGGAGACTTTATGTGGTGAGCGGGACAAGGTTAGGATAAGCAAAGAATACAAAGCAACTGAAGTGGGCAATGCAGCAAGTGAAACTGTGTCTCAGAAAGTAGAAAACGCAACTGTTGATCCTATGGATAATGAGCCAAGAATAAGTAGTAGCCTTCAACAGCCATCATCTCCATGGATTGATAGTCTAAGCAATATAAGCATTGGGGGCCTCCTGTCTGAAGCGTCATTATTTGGCGGGCTTGATCCAAAATCATTTGCTGGCATACAGCCATGTGATATAACTTCTGATTCATTGGATGCTTTTATTGCTGCTGCTCAAATTAATAATCGCCCAGTTCCAAGACTGCCTGCTGATGACTTGCGCACATCTATTTTAGATGCTGAAGAAACATGCCATGCATTTCCTCTTCGAAAGTTATCTTCCCCAACAGATGTGCAGGCAGCTTGTGGCAAGGATTATTCTGCAGTGCGCAGTCAGGATGTTTCTTCAAACTTATTAAAGTTTTCAAATGCAGACAAGGTCAATGATCAAGATGGAGCTTCACAAAATCCTCCATCCGGGAAGACTCAGACAGACTTGTTACTTTCTTCACGCCCATATGATGATGATAGAAGTCTTGGGTTAACAGGCATCAATTGGAATGATTCTATGGGACCTTTTGATCTTGGCATGCCGGCTCAGAAGCTTAATGGTGGAGACAGTCTTAGTATTGGTGGATTTGTTAAATAA

Predicted protein sequences of Glyma08g15300

Limit To All Plant Sequences

>Glyma08g15300.2   sequence type=predicted peptide   gene model=Glyma08g15300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTGRSLDRKVVKASGKCNPKTGFIGVRNSPKRTNKLDQKARGCGQELTDKENQYFPFKEHMRKCPELPNKCTFLTEKREAIELHPGQMLTSAKIKLQLFPINEGTRIGLEKDGHNPYLELTLRGRKKICSILKHLGKKWGSSSIAKGELMLFPYNIMENLSGCRRWTINDSDTTASAVYTAVGSPALFRLKYGWFYMLEPGSFGIPSTPTPDKPDVAGSGNANLEETLCGERDKVRISKEYKATEVGNAASETVSQKVENATVDPMDNEPRISSSLQQPSSPWIDSLSNISIGGLLSEASLFGGLDPKSFAGIQPCDITSDSLDAFIAAAQINNRPVPRLPADDLRTSILDAEETCHAFPLRKLSSPTDVQAACGKDYSAVRSQDVSSNLLKFSNADKVNDQDGASQNPPSGKTQTDLLLSSRPYDDDRSLGLTGINWNDSMGPFDLGMPAQKLNGGDSLSIGGFVK*

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