SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G65090 | AT | Annotation by Michelle Graham. TAIR10: DNAse I-like superfamily protein | chr5:26004282-26006656 FORWARD LENGTH=529 | SoyBase | E_val: 1.00E-15 | ISS |
| GO:0009827 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0009932 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell tip growth | SoyBase | N/A | ISS |
| GO:0010053 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root epidermal cell differentiation | SoyBase | N/A | ISS |
| GO:0032957 | GO-bp | Annotation by Michelle Graham. GO Biological Process: inositol trisphosphate metabolic process | SoyBase | N/A | ISS |
| GO:0046854 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation | SoyBase | N/A | ISS |
| GO:0046855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: inositol phosphate dephosphorylation | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| UniRef100_D3YBG4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Bristled-like protein n=1 Tax=Trifolium repens RepID=D3YBG4_TRIRP | SoyBase | E_val: 3.00E-52 | ISS |
| UniRef100_UPI0002337F65 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337F65 related cluster n=1 Tax=unknown RepID=UPI0002337F65 | SoyBase | E_val: 8.00E-102 | ISS |
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Glyma08g15291 not represented in the dataset |
Glyma08g15291 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g144500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g15291.1 sequence type=CDS gene model=Glyma08g15291 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTTCGTTTACGGGTGCACGTTCCAAAGCAAATGCTAAGTCTGAAATGATCAAAGCTAACGAGATTAACCTCTGCCCCATCAACACAAGTACCATTACATCAACCTCGCCAGATACAAGTGCCAAGAATGAGAAGAAAAAGAAGTCTATCCTTCCAAAGATTTTCGGATCAAAGCGAAATGGGAGAGGTTCAGACGAAGAGACACTCAAATCATCAAGTGCAGAAGAAGGAGATGGAGTTACTCTTGATTTGGAGAATAAGATTGAGACGAGAAGAAAAGCATTTTTGGAAGCGGCCCCCATCATGAGAAAAAGTTTCTCAGAAAGGGAGACTAGTCCTGGGATCGAAGGCCTAAATTTGTCCAATTTTGAACGGCCTATGATGACTATGGAAACTGAACTTCTCAGGATCTTTGTTGCAGCGTGGAATGTGGGAGTCACCAAGTTATGA
>Glyma08g15291.1 sequence type=predicted peptide gene model=Glyma08g15291 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSFTGARSKANAKSEMIKANEINLCPINTSTITSTSPDTSAKNEKKKKSILPKIFGSKRNGRGSDEETLKSSSAEEGDGVTLDLENKIETRRKAFLEAAPIMRKSFSERETSPGIEGLNLSNFERPMMTMETELLRIFVAAWNVGVTKL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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