Glyma08g15270 - SoyBase

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Report for Sequence Feature Glyma08g15270

Feature Type:	gene_model
Chromosome:	Gm08
Start:	11070723
stop:	11078887
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g15270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G09830	AT	Annotation by Michelle Graham. TAIR10: Uncharacterised conserved protein UCP009193 \| chr4:6188866-6190591 FORWARD LENGTH=191	SoyBase	E_val: 2.00E-57	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_B3TM33	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Holocarboxylase synthetase n=1 Tax=Elaeis guineensis RepID=B3TM33_ELAGV	SoyBase	E_val: 9.00E-80	ISS
UniRef100_C6T4Q4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T4Q4_SOYBN	SoyBase	E_val: 5.00E-160	ISS

Expression Patterns of Glyma08g15270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g15270

Paralog	Evidence	Comments
Glyma05g31960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g15270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g144000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g15270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g15270

Limit To All Plant Sequences

>Glyma08g15270.4   sequence type=transcript   gene model=Glyma08g15270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATTCGTCGTTTGTTCATTCGTAGCAGTAGATCATCTCAAATCATATTCATATCGCGTTTGGTTTTGTTTTGTTTTTCTATTTTAACACAACACAAGCACCAACTTTCTTTTTCTCTTTCTTTTAGGGTCCTTCCTCACTCTGAATCCGCCATTGGGCTGCGATGGCGAAGAAGCGAAAGTCGGTGGCAACGCGCCTTGACGAAGTGGATCGAACGATGTACTCCACTTTCTGCAGCACCGCCAACTCCCTCTCTCATCTCTACACCCACGCCATGAACCAACAAAAACTCTCATTTCAGGCCGGTGAACGACACGCTCTTGAGAAATTGTATCAATGGATTCTCAGGCAACAGCAAGAAGGATCTAGGGTGGCCACCATTGATATTGTTACCCATTTGCAGAATGAGCTTGAATATGGAGGAGAGGAGGCACCAGTGTCCCCAAGGCAGCCAATGCATCAACAGAATTCCCAGACTGCAATGCACAACACTAACTTTGGTGCGTCCATACCCTCTAATGCATTTGGAGCAACTGTGGCAGGACAGGGGATACGTGCTGGACAACCTGATCAACAACCAAAGAACTCAGTGTTCTCAAATGCACTCTCTAGTCCTATTCGACGCAGCCTTCAGCCATATCATTTGGCACAGGGGAGCTTTCCTTCATGTAATATCATGTCTTCAGGAAATGGAACCCGGAATAGTGACATGACTTATCCTAATGGCCAGAACAGGGACACAAATTCTTCCAACTCCAGTGATTGCATGGATATGCATTCAGATAGTCCTGGTCATGATTTTTCATACTGATGCTGTCATAGTTAGAACAAGGAACAAAAAAGAGGTCATTTATGAAATCTGTGGTCATAAATGCGTGGTGAAAAATGTCAAATTTATTGTGGATAAACTTCAATTTATTTGTGTAGCATTGTCGTCCAGTTTGAAAGCTTGAACATCAGCTTACATGTTAAACAGATAGTTCTTGAAAAATGTTGGCCATTTCCCAAGCGATATATAGTCATACTAGTGTGTGATGTTTGCATGAGATTTTGCGAAGTAAACTACTAGATAATTTTTTCTTGTTAATAAATCAATATGTGTTTATGATTGTGAATTTGTGCTGCTTTAAATTATG

Coding sequences of Glyma08g15270

Limit To All Plant Sequences

>Glyma08g15270.3   sequence type=CDS   gene model=Glyma08g15270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAGAAGCGAAAGTCGGTGGCAACGCGCCTTGACGAAGTGGATCGAACGATGTACTCCACTTTCTGCAGCACCGCCAACTCCCTCTCTCATCTCTACACCCACGCCATGAACCAACAAAAACTCTCATTTCAGGCCGGTGAACGACACGCTCTTGAGAAATTGTATCAATGGATTCTCAGGCAACAGCAAGAAGGATCTAGGGTGGCCACCATTGATATTGTTACCCATTTGCAGAATGAGCTTGAATATGGAGGAGAGGAGGCACCAGTGTCCCCAAGGCAGCCAATGCATCAACAGAATTCCCAGACTGCAATGCACAACACTAACTTTGGTGCGTCCATACCCTCTAATGCATTTGGAGCAACTGTGGCAGGACAGGGGATACGTGCTGGACAACCTGATCAACAACCAAAGAACTCAGTGTTCTCAAATGCACTCTCTAGTCCTATTCGACGCAGCCTTCAGCCATATCATTTGGCACAGGGGAGCTTTCCTTCATGTAATATCATGTCTTCAGGAAATGGAACCCGGAATAGTGACATGACTTATCCTAATGGCCAGAACAGGGACACAAATTCTTCCAACTCCAGTGATTGCATGGATATGCATTCAGATAGTCCTGGTCATGATTTTTCATACTGA

>Glyma08g15270.4   sequence type=CDS   gene model=Glyma08g15270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAGAAGCGAAAGTCGGTGGCAACGCGCCTTGACGAAGTGGATCGAACGATGTACTCCACTTTCTGCAGCACCGCCAACTCCCTCTCTCATCTCTACACCCACGCCATGAACCAACAAAAACTCTCATTTCAGGCCGGTGAACGACACGCTCTTGAGAAATTGTATCAATGGATTCTCAGGCAACAGCAAGAAGGATCTAGGGTGGCCACCATTGATATTGTTACCCATTTGCAGAATGAGCTTGAATATGGAGGAGAGGAGGCACCAGTGTCCCCAAGGCAGCCAATGCATCAACAGAATTCCCAGACTGCAATGCACAACACTAACTTTGGTGCGTCCATACCCTCTAATGCATTTGGAGCAACTGTGGCAGGACAGGGGATACGTGCTGGACAACCTGATCAACAACCAAAGAACTCAGTGTTCTCAAATGCACTCTCTAGTCCTATTCGACGCAGCCTTCAGCCATATCATTTGGCACAGGGGAGCTTTCCTTCATGTAATATCATGTCTTCAGGAAATGGAACCCGGAATAGTGACATGACTTATCCTAATGGCCAGAACAGGGACACAAATTCTTCCAACTCCAGTGATTGCATGGATATGCATTCAGATAGTCCTGGTCATGATTTTTCATACTGA

Predicted protein sequences of Glyma08g15270

Limit To All Plant Sequences

>Glyma08g15270.3   sequence type=predicted peptide   gene model=Glyma08g15270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKKRKSVATRLDEVDRTMYSTFCSTANSLSHLYTHAMNQQKLSFQAGERHALEKLYQWILRQQQEGSRVATIDIVTHLQNELEYGGEEAPVSPRQPMHQQNSQTAMHNTNFGASIPSNAFGATVAGQGIRAGQPDQQPKNSVFSNALSSPIRRSLQPYHLAQGSFPSCNIMSSGNGTRNSDMTYPNGQNRDTNSSNSSDCMDMHSDSPGHDFSY*

>Glyma08g15270.4   sequence type=predicted peptide   gene model=Glyma08g15270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKKRKSVATRLDEVDRTMYSTFCSTANSLSHLYTHAMNQQKLSFQAGERHALEKLYQWILRQQQEGSRVATIDIVTHLQNELEYGGEEAPVSPRQPMHQQNSQTAMHNTNFGASIPSNAFGATVAGQGIRAGQPDQQPKNSVFSNALSSPIRRSLQPYHLAQGSFPSCNIMSSGNGTRNSDMTYPNGQNRDTNSSNSSDCMDMHSDSPGHDFSY*

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