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Report for Sequence Feature Glyma08g15220

Feature Type:gene_model
Chromosome:Gm08
Start:11038816
stop:11045375
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g15220
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G22510AT Annotation by Michelle Graham. TAIR10: alkaline/neutral invertase | chr5:7474974-7477479 REVERSE LENGTH=617 SoyBaseE_val: 0ISS
GO:0005982GO-bp Annotation by Michelle Graham. GO Biological Process: starch metabolic process SoyBaseN/AISS
GO:0005987GO-bp Annotation by Michelle Graham. GO Biological Process: sucrose catabolic process SoyBaseN/AISS
GO:0048825GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon development SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004564GO-mf Annotation by Michelle Graham. GO Molecular Function: beta-fructofuranosidase activity SoyBaseN/AISS
GO:0004575GO-mf Annotation by Michelle Graham. GO Molecular Function: sucrose alpha-glucosidase activity SoyBaseN/AISS
PF04853PFAM Plant neutral invertase JGI ISS
UniRef100_G7LBD0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Alkaline/neutral invertase n=1 Tax=Medicago truncatula RepID=G7LBD0_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KTC2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTC2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g15220
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g15220
ParalogEvidenceComments
Glyma05g31920 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g15220 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g143500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g15220
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g15220
>Glyma08g15220.1   sequence type=CDS   gene model=Glyma08g15220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCCTGGGTACATCCAAGGCAGTTTTTCAGGTTCTGTCCAGGGCTGTGCCTCAAACTGGGTATAATGATTCTCTTGTGAACTCTTCAGATTTAGCATTACATTCCCAGTTTCGAGTAAAATGTATCAAGAAAAGATCCTCAAGGCATAGGGATTTAATTGAGTGTTCTAGCATGCTTCAGAGTAGGTTAATAACTCAACAATTTCAGTGGATGGGTGTCAGTTTCCATGACTACAAGACCTATAGTCGTCCACGGCTGCAGACATGCAAATGCCAACAGGCTGAAAGTGCGAGTGGAATAACTACAGGAGATGAAAATGGATCAAGACTTGTGAATGATGGTGAAACATCAAATTCAGTAAGCAATGGGATGAGTGCAAAGCATATCCTAGAGTTTGAGGATGTCGAAGCCCAACAGTTGAAACAGGAAAAGGAGGTTTTGTCATCTAATCTTACAAATGGATCTATTACAGACAGCTTTGACACAATTGGCCGCAACTCTATTGAGGAAGAAGCATGGGACCTACTAAGGGAATCTGTAGTTTATTATTGTGGCAATCCAATTGGAACTATTGCTGCAAAGGACCCAACCAGTTCCAATGTTTTGAATTATGACCAGGTCTTTATTCGTGATTTCATTCCTTCTGGAATTGCCTTCCTATTGAAGGGGGAGTATGATATTGTTCGGAATTTTATCCTTTATACACTTCAGTTGCAGAGCTGGGAGAAAACAATGGATTGTCATAGTCCAGGACAAGGTTTGATGCCTGCTAGTTTTAAGGTTAGGACAGTTCCTTTGGACGGTGATGATTCTGCAACAGAAGAAGTTTTGGATCCTGACTTTGGAGAGGCAGCCATTGGTCGTGTTGCTCCAGTTGATTCAGGATTGTGGTGGATTATTTTATTACGAGCATACGGAAAATGCTCTGGTGATCTATCAGTTCAGGAGAGAGTTGATGTTCAAACAGGAATTAAGATGATTTTGAAGTTGTGTCTTGCTGATGGCTTTGACATGTTCCCAACCTTATTAGTAACTGATGGTTCTTGCATGATAGATCGGAGGATGGGAATTCATGGGCATCCTTTGGAGATTCAGGCACTGTTTTATTCTGCCTTACTTTGTGCACGTGAGATGCTTACTCCAGAGGATGGATCAGCTGATCTTATACGGGCACTGAACAACCGTCTGGTAGCTCTTTCATTTCATATTAGAGAATACTATTGGATTGATATGAAAAAATTAAATGAGATTTACCGTTACAAGACAGAGGAGTACTCATATGATGCAGTTAATAAGTTCAACATATACCCAGACCAGATTTCTCCTTGGTTAGTGGAATGGATGCCAAACAAAGGAGGCTATTTAATTGGCAACCTACAACCAGCTCACATGGATTTCCGATTTTTTTCACTGGGAAACTTGTGGTCTGTCGTAAACAGTTTGGCCACTGAGGAACAATCACATGCCATTTTGGATCTTATTGAGGCCAAATGGTCAGATTTGGTGGCAGAGATGCCATTCAAGATTTGTTATCCTGCTCTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACACGCCTTGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAGCTCACCGTTGCATGCATAAAGATGAAGAGAACACATATTGCTGCAAAAGCTGTTGAGATTGCCGAGAGACGCATATTAAGAGACAGGTGGCCAGAATATTATGACACAAAGAGATCTCGATTCGTCGGAAAGCAATCTCGACTATATCAGACTTGGTCAATCGCAGGATACCTTGTGGCGAAGCTGCTGCTTGCAGACCCAAGTAAAGCAAACACATTGATCACTGAAGAGGATTCTGAGCTTGTGAATGCCTTGATAAGTGCCAACCCTAGAGGAAAGCGAGGGCGCAAAAATTTGAGGCAGACTTACATTGTATGA
Predicted protein sequences of Glyma08g15220
>Glyma08g15220.1   sequence type=predicted peptide   gene model=Glyma08g15220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLGTSKAVFQVLSRAVPQTGYNDSLVNSSDLALHSQFRVKCIKKRSSRHRDLIECSSMLQSRLITQQFQWMGVSFHDYKTYSRPRLQTCKCQQAESASGITTGDENGSRLVNDGETSNSVSNGMSAKHILEFEDVEAQQLKQEKEVLSSNLTNGSITDSFDTIGRNSIEEEAWDLLRESVVYYCGNPIGTIAAKDPTSSNVLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILYTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLSVQERVDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLTPEDGSADLIRALNNRLVALSFHIREYYWIDMKKLNEIYRYKTEEYSYDAVNKFNIYPDQISPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNLWSVVNSLATEEQSHAILDLIEAKWSDLVAEMPFKICYPALDGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQLTVACIKMKRTHIAAKAVEIAERRILRDRWPEYYDTKRSRFVGKQSRLYQTWSIAGYLVAKLLLADPSKANTLITEEDSELVNALISANPRGKRGRKNLRQTYIV*






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