Glyma08g15150 - SoyBase

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Report for Sequence Feature Glyma08g15150

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10979845
stop:	10986720
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g15150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39460	AT	Annotation by Michelle Graham. TAIR10: S-adenosylmethionine carrier 1 \| chr4:18356093-18358596 REVERSE LENGTH=325	SoyBase	E_val: 5.00E-175	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006839	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial transport	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0009902	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast relocation	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0015805	GO-bp	Annotation by Michelle Graham. GO Biological Process: S-adenosylmethionine transport	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0042793	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0000095	GO-mf	Annotation by Michelle Graham. GO Molecular Function: S-adenosylmethionine transmembrane transporter activity	SoyBase	N/A	ISS
KOG0768	KOG	Mitochondrial carrier protein PET8	JGI		ISS
PTHR24089	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24089:SF45	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00153	PFAM	Mitochondrial carrier protein	JGI		ISS
UniRef100_G7LBC1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: S-adenosylmethionine mitochondrial carrier protein n=2 Tax=Medicago truncatula RepID=G7LBC1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K4S4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4S4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g15150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g15150 not represented in the dataset	Glyma08g15150 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g15150

Paralog	Evidence	Comments
Glyma05g31870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g15150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g143100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g15150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g15150

Limit To All Plant Sequences

>Glyma08g15150.2   sequence type=transcript   gene model=Glyma08g15150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATAAACTAAAGAAAACTATCCTGCATCAAGAATTAACGGATAGTTATTATAGATAACTCGTATCTGCACACTCCTGCTTCTTCTATCCGCTACTGTCATCTCTTCACTTCCCTTCTATCACTCTTCTCACTTCTGAGTGGTGGAGTCGTTGGGCCGTAATGGGTCTCTTTACACTGTCCGTTATGGTTAATGACTCTGCCATTTCATTACCAGATACTTGTACGAAAAGAAAGCAGAACTTACTTCTGAAAAATTCTTTTGCATCAGTTAGCATGGGAGATGAAAAGCCATTTGACTTCCTACGCACTTTATTTGAGGGCGTTATTGCAGGTGGTACAGCTGGAGTTGTTGTTGAAACAGCTTTATACCCAATTGACACAATAAAAACACGTCTGCAGGCTGCTCGCGGAGGAGAAAAACTAATATTGAAGGGCCTTTATTCTGGATTGGCGGGGAACCTTGTTGGTGTCTTACCGGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCTGAGGATATTTCCTGAACACCTAAGTGCTTTTACTCATTTGACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACAGAGGTTATCAAGCAACGAATGCAAACTGGGCAGTTTGCTTCAGCTTCTGGTGCTGTTCGCTTTATTGCTTCTAAGGAAGGCTTCAAAGGATTTTATGCTGGATATGGATCTTTTTTGTTGAGGGATTTACCCTTTGATGCTATTCAGTTTTGCATCTATGAGCAGATTCGAATAGGTTATATGCTTGCGGCACAAAGAAATCTGAATGATCCAGAAAATGCAATTATTGGTGCTTTTGCAGGTGCACTAACTGGAGCTATAACTACCCCCCTTGATGTCATCAAGACAAGGTTAATGGTTCAAGGATCTGCAAACCAATATAAGGGAATCGTTGACTGTGTTCAAACCATTATTAAGGAAGAAGGACCTCGTGCCTTTTTGAAGGGTATTGGTCCCAGAGTACTATGGATAGGCATAGGTGGTTCAATATTCTTTGGTGTCCTTGAGAGTACAAAGCGTTTTCTTTCTGAGAGACGCCCTACCGTACCTCAGAACACATATTCAGAGAAGAGCAAAGATTAATAGTTTTTGTCCTAGCCTCTTTTGTTTTTTTATTCCAATTCTCCCCTCAGTGCCTTTTCCAAGTGAAACAATATTTTCTTAAATACCGGATACTCTTTTAATTTTTAATTTTTCAATTTTAAGCGTTGAGAGCACAGTTGTATCTTGATTATTTCCCTTCCGGCTTGCTTGTCCGTGAGCTATATAACATTGTTTAACATTTTGCGTGTTGAAATTTGGGAAGCATGATATTAATATGAATTGAGATTAGGATTCTTTGATGAATTATAGTTAACAAAAATG

Coding sequences of Glyma08g15150

Limit To All Plant Sequences

>Glyma08g15150.1   sequence type=CDS   gene model=Glyma08g15150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGATGAAAAGCCATTTGACTTCCTACGCACTTTATTTGAGGGCGTTATTGCAGGTGGTACAGCTGGAGTTGTTGTTGAAACAGCTTTATACCCAATTGACACAATAAAAACACGTCTGCAGGCTGCTCGCGGAGGAGAAAAACTAATATTGAAGGGCCTTTATTCTGGATTGGCGGGGAACCTTGTTGGTGTCTTACCGGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCTGAGGATATTTCCTGAACACCTAAGTGCTTTTACTCATTTGACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACAGAGGTTATCAAGCAACGAATGCAAACTGGGCAGTTTGCTTCAGCTTCTGGTGCTGTTCGCTTTATTGCTTCTAAGGAAGGCTTCAAAGGATTTTATGCTGGATATGGATCTTTTTTGTTGAGGGATTTACCCTTTGATGCTATTCAGTTTTGCATCTATGAGCAGATTCGAATAGGTTATATGCTTGCGGCACAAAGAAATCTGAATGATCCAGAAAATGCAATTATTGGTGCTTTTGCAGGTGCACTAACTGGAGCTATAACTACCCCCCTTGATGTCATCAAGACAAGGTTAATGGTTCAAGGATCTGCAAACCAATATAAGGGAATCGTTGACTGTGTTCAAACCATTATTAAGGAAGAAGGACCTCGTGCCTTTTTGAAGGGTATTGGTCCCAGAGTACTATGGATAGGCATAGGTGGTTCAATATTCTTTGGTGTCCTTGAGAGTACAAAGCGTTTTCTTTCTGAGAGACGCCCTACCGTACCTCAGAACACATATTCAGAGAAGAGCAAAGATTAA

>Glyma08g15150.2   sequence type=CDS   gene model=Glyma08g15150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCTCTTTACACTGTCCGTTATGGTTAATGACTCTGCCATTTCATTACCAGATACTTGTACGAAAAGAAAGCAGAACTTACTTCTGAAAAATTCTTTTGCATCAGTTAGCATGGGAGATGAAAAGCCATTTGACTTCCTACGCACTTTATTTGAGGGCGTTATTGCAGGTGGTACAGCTGGAGTTGTTGTTGAAACAGCTTTATACCCAATTGACACAATAAAAACACGTCTGCAGGCTGCTCGCGGAGGAGAAAAACTAATATTGAAGGGCCTTTATTCTGGATTGGCGGGGAACCTTGTTGGTGTCTTACCGGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCTGAGGATATTTCCTGAACACCTAAGTGCTTTTACTCATTTGACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACAGAGGTTATCAAGCAACGAATGCAAACTGGGCAGTTTGCTTCAGCTTCTGGTGCTGTTCGCTTTATTGCTTCTAAGGAAGGCTTCAAAGGATTTTATGCTGGATATGGATCTTTTTTGTTGAGGGATTTACCCTTTGATGCTATTCAGTTTTGCATCTATGAGCAGATTCGAATAGGTTATATGCTTGCGGCACAAAGAAATCTGAATGATCCAGAAAATGCAATTATTGGTGCTTTTGCAGGTGCACTAACTGGAGCTATAACTACCCCCCTTGATGTCATCAAGACAAGGTTAATGGTTCAAGGATCTGCAAACCAATATAAGGGAATCGTTGACTGTGTTCAAACCATTATTAAGGAAGAAGGACCTCGTGCCTTTTTGAAGGGTATTGGTCCCAGAGTACTATGGATAGGCATAGGTGGTTCAATATTCTTTGGTGTCCTTGAGAGTACAAAGCGTTTTCTTTCTGAGAGACGCCCTACCGTACCTCAGAACACATATTCAGAGAAGAGCAAAGATTAA

Predicted protein sequences of Glyma08g15150

Limit To All Plant Sequences

>Glyma08g15150.1   sequence type=predicted peptide   gene model=Glyma08g15150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDEKPFDFLRTLFEGVIAGGTAGVVVETALYPIDTIKTRLQAARGGEKLILKGLYSGLAGNLVGVLPASALFVGVYEPIKQKLLRIFPEHLSAFTHLTAGAIGGIAASLIRVPTEVIKQRMQTGQFASASGAVRFIASKEGFKGFYAGYGSFLLRDLPFDAIQFCIYEQIRIGYMLAAQRNLNDPENAIIGAFAGALTGAITTPLDVIKTRLMVQGSANQYKGIVDCVQTIIKEEGPRAFLKGIGPRVLWIGIGGSIFFGVLESTKRFLSERRPTVPQNTYSEKSKD*

>Glyma08g15150.2   sequence type=predicted peptide   gene model=Glyma08g15150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLFTLSVMVNDSAISLPDTCTKRKQNLLLKNSFASVSMGDEKPFDFLRTLFEGVIAGGTAGVVVETALYPIDTIKTRLQAARGGEKLILKGLYSGLAGNLVGVLPASALFVGVYEPIKQKLLRIFPEHLSAFTHLTAGAIGGIAASLIRVPTEVIKQRMQTGQFASASGAVRFIASKEGFKGFYAGYGSFLLRDLPFDAIQFCIYEQIRIGYMLAAQRNLNDPENAIIGAFAGALTGAITTPLDVIKTRLMVQGSANQYKGIVDCVQTIIKEEGPRAFLKGIGPRVLWIGIGGSIFFGVLESTKRFLSERRPTVPQNTYSEKSKD*

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