Glyma08g15100 - SoyBase

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Report for Sequence Feature Glyma08g15100

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10951545
stop:	10954974
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g15100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21870	AT	Annotation by Michelle Graham. TAIR10: copper ion binding;cobalt ion binding;zinc ion binding \| chr2:9320456-9322618 REVERSE LENGTH=240	SoyBase	E_val: 2.00E-116	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005753	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial proton-transporting ATP synthase complex	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0050897	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding	SoyBase	N/A	ISS
UniRef100_I1KTB0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTB0_SOYBN	SoyBase	E_val: 9.00E-168	ISS
UniRef100_Q9SJ12	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Probable ATP synthase 24 kDa subunit, mitochondrial n=2 Tax=Arabidopsis thaliana RepID=ATP7_ARATH	SoyBase	E_val: 8.00E-114	ISS

Expression Patterns of Glyma08g15100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g15100 not represented in the dataset	Glyma08g15100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g15100

Paralog	Evidence	Comments
Glyma05g31830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g15100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g142800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g15100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g15100

Limit To All Plant Sequences

>Glyma08g15100.2   sequence type=transcript   gene model=Glyma08g15100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGGTGTACCCTACCTGATTAGTCCCTTTGTGATTCCTGGGAAACTCATTTCATTAGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGGTATCACAGTGAAACGAAGAAGCCCTAACTACGCACGCACTCATTCTTGAGAAAGCTCAATATTCATTCGTCCATGGCACTCTCTTCTCGTCTCTTTTCCAAATCCAAATTGATCTATGGCTGTCAAATACTTCTGCAAAAGGAGCATGCTATTCCAGTTCGTCACTTTGCTAAAGAGTCTGCCCCTCCTGCCCTTAAGGGAGATCAGATGCTGAAGAACATTTTTGTGGAGGTGAAGAACAAATTTGAGACTGCCATAGGAATATTAAAGAAGGAGAAGATCACCATTGACCCAGAAGATCCAGCTGCTGTTTCTCATTATGCAAAGGTCATGAAAACAGTTAGAGAGAAGGCAAGCTTGTTGTCGGAGTCCCAAGACATACTATCCACCATTGAAATTGAGACTCAGGATATTCCAGATGCTCGGACCTATCTTCTGACTTTGAAGGAAATAAGAGTCAAGAAAGGTCTTACAGATGATCTTGGTGCAGAGGCTCTGATGATAGATGCATTGGACAAAATTGAAAAGGATTTAAAAAAACCTTTACTGAGAAATGATAAGAAAGGAATGGACCTTCTCTTGGCAGAGTTTGATAAGATTAATAAGAAAATTGGAATTCGAAAGGAAGATCTACCAAAGTATGAAGAGGAGCTAGAACTTAAAGTAGCCAAAGCACAACTGGAGGAGCTGAAGAAGGATGCTCTCGAGGCAATGGAAACTCAAAAGAAAAGGTATTACTAATGATATCATTTCTTGCTCTTGTATTTTCCCCTTCTCCCCAATTCTCTTTAATGCTTTTGGACACTGGACATCGTTGATAAGCACATGATAATTACCTTTTATTTTCTGCTTAATTTTAACTCCCAAGTCCAAAGTTCAAGGATGATGCTTGGCCTTTCCTTGAATTGTAGGTTTTTATGGCTTTTGAACTTTGAACATATGAATGTAACAGTGTCCAATTGACGCGTTGGAAATTGGACTTCTGTTTTCTCCTCTACTTTTAGAATTACTTTTCACTCGTTTCTCTATGTGCAATAGGATAGAAATTTTAAACATGGTAGATTGGTAGGATTTATTTTGCCTCATCTGTTTGCCATTTCAGGGAGGAATTCAAGGATGAGCCTGAATCGGTCGATGTCAAAACTTTGGACATCAGAAACTTCCTTTAAAATGTCTTCAGGATGTTTTTGCACACACTAGAAATTATTGCATTTGGATAATGATGAAGCTGTGTTCAATAAGTAGACACCACTGGTTTGAAGTGCAACATTGATGCCAGTTTGAATATTCTTGAGTTTTTTCAAGATCTTTTTTGTATTTCAGATTCCATGTTAAACTGGAAGTTGAGGCTGTCAAATTTTCTAAATTTTTCTTGTCACGTTGTTTCCCAAGTATTTATTCTTATTGATTTTATGGCTGTTCCGCGACCCTGGTAACAATCTTACGACATTTAATTTAAAATAAATACTACTCTCTTCATCCCATAAT

>Glyma08g15100.3   sequence type=transcript   gene model=Glyma08g15100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAGTCCCTTTGTGATTCCTGGGAAACTCATTTCATTAGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGGTATCACAGTGAAACGAAGAAGCCCTAACTACGCACGCACTCATTCTTGAGAAAGCTCAATATTCATTCGTCCATGGCACTCTCTTCTCGTCTCTTTTCCAAATCCAAATTGATCTATGGCTGTCAAATACTTCTGCAAAAGGAGCATGCTATTCCAGTTCGTCACTTTGCTAAAGAGTCTGCCCCTCCTGCCCTTAAGGGAGATCAGATGCTGAAGAACATTTTTGTGGAGGTGAAGAACAAATTTGAGACTGCCATAGGAATATTAAAGAAGGAGAAGATCACCATTGACCCAGAAGATCCAGCTGCTGTTTCTCATTATGCAAAGGTCATGAAAACAGTTAGAGAGAAGGCAAGCTTGTTGTCGGAGTCCCAAGACATACTATCCACCATTGAAATTGAGACTCAGGATATTCCAGATGCTCGGACCTATCTTCTGACTTTGAAGGAAATAAGAGTCAAGTGTGTGATGATGATGATCTATTCTCTTCTCTTTACTCTCTTCATTTTGTAACTAGATGTGATGATTGATATGTAAAGTGTGCCCTTTTACTTTTTCATTTATACCAGCTTCATTGTTTTGTGATATGTAAAATGATTCTTTCAATTCCATGCACCATTTTGACTTAATTATCAAATAGTGCTTTTGTTTTAAACCTCCAGTTCCAAAAATTGCCTGATGGCTTTGTTTTTTTCTGCAAATAGTGACTGGCCTAAATTATTATTGGGATTTACCTAATAATGTCTTTTTATACTTGTGTATGCATATGTTTTCTATACACAATTGAGATAAAAGGCAACATACGGCATCCCTTGCTT

Coding sequences of Glyma08g15100

Limit To All Plant Sequences

>Glyma08g15100.1   sequence type=CDS   gene model=Glyma08g15100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTCTCTTCTCGTCTCTTTTCCAAATCCAAATTGATCTATGGCTGTCAAATACTTCTGCAAAAGGAGCATGCTATTCCAGTTCGTCACTTTGCTAAAGAGTCTGCCCCTCCTGCCCTTAAGGGAGATCAGATGCTGAAGAACATTTTTGTGGAGGTGAAGAACAAATTTGAGACTGCCATAGGAATATTAAAGAAGGAGAAGATCACCATTGACCCAGAAGATCCAGCTGCTGTTTCTCATTATGCAAAGGTCATGAAAACAGTTAGAGAGAAGGCAAGCTTGTTGTCGGAGTCCCAAGACATACTATCCACCATTGAAATTGAGACTCAGGATATTCCAGATGCTCGGACCTATCTTCTGACTTTGAAGGAAATAAGAGTCAAGAAAGGTCTTACAGATGATCTTGGTGCAGAGGCTCTGATGATAGATGCATTGGACAAAATTGAAAAGGATTTAAAAAAACCTTTACTGAGAAATGATAAGAAAGGAATGGACCTTCTCTTGGCAGAGTTTGATAAGATTAATAAGAAAATTGGAATTCGAAAGGAAGATCTACCAAAGTATGAAGAGGAGCTAGAACTTAAAGTAGCCAAAGCACAACTGGAGGAGCTGAAGAAGGATGCTCTCGAGGCAATGGAAACTCAAAAGAAAAGGGAGGAATTCAAGGATGAGCCTGAATCGGTCGATGTCAAAACTTTGGACATCAGAAACTTCCTTTAA

>Glyma08g15100.2   sequence type=CDS   gene model=Glyma08g15100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTCTCTTCTCGTCTCTTTTCCAAATCCAAATTGATCTATGGCTGTCAAATACTTCTGCAAAAGGAGCATGCTATTCCAGTTCGTCACTTTGCTAAAGAGTCTGCCCCTCCTGCCCTTAAGGGAGATCAGATGCTGAAGAACATTTTTGTGGAGGTGAAGAACAAATTTGAGACTGCCATAGGAATATTAAAGAAGGAGAAGATCACCATTGACCCAGAAGATCCAGCTGCTGTTTCTCATTATGCAAAGGTCATGAAAACAGTTAGAGAGAAGGCAAGCTTGTTGTCGGAGTCCCAAGACATACTATCCACCATTGAAATTGAGACTCAGGATATTCCAGATGCTCGGACCTATCTTCTGACTTTGAAGGAAATAAGAGTCAAGAAAGGTCTTACAGATGATCTTGGTGCAGAGGCTCTGATGATAGATGCATTGGACAAAATTGAAAAGGATTTAAAAAAACCTTTACTGAGAAATGATAAGAAAGGAATGGACCTTCTCTTGGCAGAGTTTGATAAGATTAATAAGAAAATTGGAATTCGAAAGGAAGATCTACCAAAGTATGAAGAGGAGCTAGAACTTAAAGTAGCCAAAGCACAACTGGAGGAGCTGAAGAAGGATGCTCTCGAGGCAATGGAAACTCAAAAGAAAAGGTATTACTAA

>Glyma08g15100.3   sequence type=CDS   gene model=Glyma08g15100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTCTCTTCTCGTCTCTTTTCCAAATCCAAATTGATCTATGGCTGTCAAATACTTCTGCAAAAGGAGCATGCTATTCCAGTTCGTCACTTTGCTAAAGAGTCTGCCCCTCCTGCCCTTAAGGGAGATCAGATGCTGAAGAACATTTTTGTGGAGGTGAAGAACAAATTTGAGACTGCCATAGGAATATTAAAGAAGGAGAAGATCACCATTGACCCAGAAGATCCAGCTGCTGTTTCTCATTATGCAAAGGTCATGAAAACAGTTAGAGAGAAGGCAAGCTTGTTGTCGGAGTCCCAAGACATACTATCCACCATTGAAATTGAGACTCAGGATATTCCAGATGCTCGGACCTATCTTCTGACTTTGAAGGAAATAAGAGTCAAGTGTGTGATGATGATGATCTATTCTCTTCTCTTTACTCTCTTCATTTTGTAA

Predicted protein sequences of Glyma08g15100

Limit To All Plant Sequences

>Glyma08g15100.1   sequence type=predicted peptide   gene model=Glyma08g15100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSSRLFSKSKLIYGCQILLQKEHAIPVRHFAKESAPPALKGDQMLKNIFVEVKNKFETAIGILKKEKITIDPEDPAAVSHYAKVMKTVREKASLLSESQDILSTIEIETQDIPDARTYLLTLKEIRVKKGLTDDLGAEALMIDALDKIEKDLKKPLLRNDKKGMDLLLAEFDKINKKIGIRKEDLPKYEEELELKVAKAQLEELKKDALEAMETQKKREEFKDEPESVDVKTLDIRNFL*

>Glyma08g15100.2   sequence type=predicted peptide   gene model=Glyma08g15100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSSRLFSKSKLIYGCQILLQKEHAIPVRHFAKESAPPALKGDQMLKNIFVEVKNKFETAIGILKKEKITIDPEDPAAVSHYAKVMKTVREKASLLSESQDILSTIEIETQDIPDARTYLLTLKEIRVKKGLTDDLGAEALMIDALDKIEKDLKKPLLRNDKKGMDLLLAEFDKINKKIGIRKEDLPKYEEELELKVAKAQLEELKKDALEAMETQKKRYY*

>Glyma08g15100.3   sequence type=predicted peptide   gene model=Glyma08g15100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSSRLFSKSKLIYGCQILLQKEHAIPVRHFAKESAPPALKGDQMLKNIFVEVKNKFETAIGILKKEKITIDPEDPAAVSHYAKVMKTVREKASLLSESQDILSTIEIETQDIPDARTYLLTLKEIRVKCVMMMIYSLLFTLFIL*

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