Glyma08g15090 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g15090

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10946832
stop:	10949797
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g15090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10500	AT	Annotation by Michelle Graham. TAIR10: chloroplast-localized ISCA-like protein \| chr1:3460160-3461340 REVERSE LENGTH=180	SoyBase	E_val: 1.00E-80	ISS
GO:0016226	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0005198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural molecule activity	SoyBase	N/A	ISS
GO:0051536	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding	SoyBase	N/A	ISS
KOG1120	KOG	Fe-S cluster biosynthesis protein ISA1 (contains a HesB-like domain)	JGI		ISS
PTHR10072	Panther	HES-B RELATED	JGI		ISS
PTHR10072:SF31	Panther	IRON-SULFUR CLUSTER ASSEMBLY PROTEIN	JGI		ISS
PF01521	PFAM	Iron-sulphur cluster biosynthesis	JGI		ISS
UniRef100_C6SWQ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWQ3_SOYBN	SoyBase	E_val: 2.00E-116	ISS
UniRef100_E4MXL6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-34-D04 n=1 Tax=Eutrema halophilum RepID=E4MXL6_THEHA	SoyBase	E_val: 2.00E-81	ISS

Expression Patterns of Glyma08g15090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g15090

Paralog	Evidence	Comments
Glyma05g31820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g15090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g142700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g15090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g15090

Limit To All Plant Sequences

>Glyma08g15090.2   sequence type=transcript   gene model=Glyma08g15090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAACGACAACATGAATTGCGTAGAAATATCAAATTCTCAAATCTCACCCGCACACGACAGACACGAACACGATGGTTGAAATTTGAAGCAAAGCACGTGTTTGTGTGTGACCTTCTCTCTCTCTAAACTCCGATGGCTTTCTCTGCAATCACTACCTTGCCCTCTCCTCAATTTCTCCGCCTTCCTCAATCTTCACCCTCTCTTCGATTTTCACCGCCAATTCTCAAACGCCCCAAACCCCTCTCCATTCGATCAGTTTCAATCCCCGCTGCACCAGCATCTGGTTCTCTGGCCCCTGCAGTTTCACTTACGGATAATGCGCTGAAGCACTTGAATAAGATGAGGTCTGAACGAAATCAAGATTTATGTTTAAGAATAGGTGTCAAACAGGGAGGGTGCTCTGGTATGTCATACACAATGGATTTTGAAGACAGGGCTAATAAAAGGCCAGATGATTCAATTATTGAGTATGAAGGTTTTGAAATTGGTATGATTCATATTCTGTTTTTTATCATTGACATTTTTAATGCACAAGCTTTAGCTACATCCCTTCATTTTATGCAATTTTACAGGTTGATTTGTCAAGATTGCCAATGAATGCTCTTCACCTTACACACCATAACTTCTGTATAAAATTATTCGCCTGATTAAGCTATTTGACCAAGACAAAGTGTGTAATGTTTGGCACTTGGTAGTTGCAAATAGGTGGAGGATACTAAACGGGTTGTAGCGGTGATGATAATGCTAATTATGTTTT

Coding sequences of Glyma08g15090

Limit To All Plant Sequences

>Glyma08g15090.1   sequence type=CDS   gene model=Glyma08g15090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCTCTGCAATCACTACCTTGCCCTCTCCTCAATTTCTCCGCCTTCCTCAATCTTCACCCTCTCTTCGATTTTCACCGCCAATTCTCAAACGCCCCAAACCCCTCTCCATTCGATCAGTTTCAATCCCCGCTGCACCAGCATCTGGTTCTCTGGCCCCTGCAGTTTCACTTACGGATAATGCGCTGAAGCACTTGAATAAGATGAGGTCTGAACGAAATCAAGATTTATGTTTAAGAATAGGTGTCAAACAGGGAGGGTGCTCTGGTATGTCATACACAATGGATTTTGAAGACAGGGCTAATAAAAGGCCAGATGATTCAATTATTGAGTATGAAGGTTTTGAAATTGTTTGTGATCCTAAGAGCCTACTCTTCATATTTGGCATGCAATTAGATTACAGTGATGCTCTGATTGGGGGAGGCTTCTCTTTCAAGAATCCTAACGCGACACAGACTTGTGGATGTGGTAAATCCTTTGCCGCTGAAATGTAG

>Glyma08g15090.2   sequence type=CDS   gene model=Glyma08g15090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCTCTGCAATCACTACCTTGCCCTCTCCTCAATTTCTCCGCCTTCCTCAATCTTCACCCTCTCTTCGATTTTCACCGCCAATTCTCAAACGCCCCAAACCCCTCTCCATTCGATCAGTTTCAATCCCCGCTGCACCAGCATCTGGTTCTCTGGCCCCTGCAGTTTCACTTACGGATAATGCGCTGAAGCACTTGAATAAGATGAGGTCTGAACGAAATCAAGATTTATGTTTAAGAATAGGTGTCAAACAGGGAGGGTGCTCTGGTATGTCATACACAATGGATTTTGAAGACAGGGCTAATAAAAGGCCAGATGATTCAATTATTGAGTATGAAGGTTTTGAAATTGGTATGATTCATATTCTGTTTTTTATCATTGACATTTTTAATGCACAAGCTTTAGCTACATCCCTTCATTTTATGCAATTTTACAGGTTGATTTGTCAAGATTGCCAATGA

Predicted protein sequences of Glyma08g15090

Limit To All Plant Sequences

>Glyma08g15090.1   sequence type=predicted peptide   gene model=Glyma08g15090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFSAITTLPSPQFLRLPQSSPSLRFSPPILKRPKPLSIRSVSIPAAPASGSLAPAVSLTDNALKHLNKMRSERNQDLCLRIGVKQGGCSGMSYTMDFEDRANKRPDDSIIEYEGFEIVCDPKSLLFIFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM*

>Glyma08g15090.2   sequence type=predicted peptide   gene model=Glyma08g15090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFSAITTLPSPQFLRLPQSSPSLRFSPPILKRPKPLSIRSVSIPAAPASGSLAPAVSLTDNALKHLNKMRSERNQDLCLRIGVKQGGCSGMSYTMDFEDRANKRPDDSIIEYEGFEIGMIHILFFIIDIFNAQALATSLHFMQFYRLICQDCQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain