Glyma08g15061 - SoyBase

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Report for Sequence Feature Glyma08g15061

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10938066
stop:	10939051
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g15061

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G50870	AT	Annotation by Michelle Graham. TAIR10: GATA type zinc finger transcription factor family protein \| chr3:18911112-18912369 FORWARD LENGTH=295	SoyBase	E_val: 2.00E-17	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0048446	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal morphogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF00320	PFAM	GATA zinc finger	JGI		ISS
UniRef100_G7KDL1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GATA transcription factor n=1 Tax=Medicago truncatula RepID=G7KDL1_MEDTR	SoyBase	E_val: 3.00E-27	ISS
UniRef100_I1LHS9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LHS9_SOYBN	SoyBase	E_val: 2.00E-47	ISS

Expression Patterns of Glyma08g15061

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g15061 not represented in the dataset	Glyma08g15061 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g15061 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g142500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g15061

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g15061

Limit To All Plant Sequences

>Glyma08g15061.1   sequence type=CDS   gene model=Glyma08g15061   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGTATGTTTCACAGCCAAACCACCAGCTCCTTCGCCACGTTTTTCTCCATGCCCAACCACAAACCACCACCCTACATGATTCCGACAACATTTATGACTATTCTTCCTTCACTCCCTCTTCCTTTTCTTCCGTTGACTGCAACCTCTCCCTCGGTACCCCTTCCACCTGCGTCTCCGAAGACGAAGAAAAACGAAGCCGCCACGAATGCCATTCCGTCTCTAACTTCTGCTGGGACTTACTACAATCCAAACACAACAACCCTCAATCCCATTCCAAGTCCTCCGGAACCACCAACACCACCGACCCTCTCCTCGCTCGCCGCTGCGCCAATTGTGATACCACTTCTACTCCTCTCTGGAGAAATGCCCCCGTGGCCCTAAGGTACGTAAATAACTACAATATTTAG

Predicted protein sequences of Glyma08g15061

Limit To All Plant Sequences

>Glyma08g15061.1   sequence type=predicted peptide   gene model=Glyma08g15061   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWYVSQPNHQLLRHVFLHAQPQTTTLHDSDNIYDYSSFTPSSFSSVDCNLSLGTPSTCVSEDEEKRSRHECHSVSNFCWDLLQSKHNNPQSHSKSSGTTNTTDPLLARRCANCDTTSTPLWRNAPVALRYVNNYNI*

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