Report for Sequence Feature Glyma08g15050
Feature Type: gene_model
Chromosome: Gm08
Start: 10932560
stop: 10935883
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g15050
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G64810 AT
Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 51 | chr5:25908415-25909687 FORWARD LENGTH=194
SoyBase E_val: 2.00E-38 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009867 GO-bp
Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway
SoyBase N/A ISS
GO:0042742 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to bacterium
SoyBase N/A ISS
GO:0050832 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to fungus
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
PF03106 PFAM
WRKY DNA -binding domain
JGI ISS
UniRef100_C6TDN9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TDN9_SOYBN
SoyBase E_val: 8.00E-134 ISS
UniRef100_Q2PJS4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: WRKY6 n=1 Tax=Glycine max RepID=Q2PJS4_SOYBN
SoyBase E_val: 1.00E-132 ISS
Proteins Associated with Glyma08g15050
Locus Gene Symbol Protein Name
WRKY6 WRKY Transcription Factor
Expression Patterns of Glyma08g15050
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g15050
Paralog Evidence Comments
Glyma05g31800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g15050 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g142400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g15050
Coding sequences of Glyma08g15050
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g15050.1 sequence type=CDS gene model=Glyma08g15050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACTTCTACTTTGGAAACTCTCCTCCTTATCCCAATAATTATGCTCATAATTCTCTTAATATGGCTCTATCTTCCCCTGAGATTGCACTATCCGATTATCTCATGCTCGATGACTATGTTGATCATCAAGATTCTCGATCATCACAAAGCACCGAGTCATCTGAAAAAGCAACCTTCAATGATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACATAAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGATCGCGTTTAGAACCAAATCAGAGCTTGAGATCATGGATGATGGATACAAGTGGAGGAAGTACGGCAAGAAGTCCGTGAAGAGCAGTCCCAATCTAAGGAACTACTACAAATGTTCAAGTGGAGGATGCAGTGTGAAGAAAAGGGTGGAAAGGGATAGAGATGACTACAGCTACGTGATAACAACATATGAAGGTGTGCACAATCATGAGAGCCCATTTACCACATACTACAGCCCCATCTCCTTCGTACATTCTGATACTACTTTCAAATGA
Predicted protein sequences of Glyma08g15050
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g15050.1 sequence type=predicted peptide gene model=Glyma08g15050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDFYFGNSPPYPNNYAHNSLNMALSSPEIALSDYLMLDDYVDHQDSRSSQSTESSEKATFNDATHGFSTGATSKNNNINCKNGINENKGGVGPRIAFRTKSELEIMDDGYKWRKYGKKSVKSSPNLRNYYKCSSGGCSVKKRVERDRDDYSYVITTYEGVHNHESPFTTYYSPISFVHSDTTFK*