Glyma08g15000 - SoyBase

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Report for Sequence Feature Glyma08g15000

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10912928
stop:	10914889
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g15000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74060	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L6 family protein \| chr1:27850033-27851299 REVERSE LENGTH=233	SoyBase	E_val: 2.00E-114	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG1694	KOG	60s ribosomal protein L6	JGI		ISS
PTHR10715	Panther	60S RIBOSOMAL PROTEIN L6	JGI		ISS
PF01159	PFAM	Ribosomal protein L6e	JGI		ISS
PF03868	PFAM	Ribosomal protein L6, N-terminal domain	JGI		ISS
UniRef100_B7FH28	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L6 n=1 Tax=Medicago truncatula RepID=B7FH28_MEDTR	SoyBase	E_val: 9.00E-138	ISS
UniRef100_C6SZF9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6SZF9_SOYBN	SoyBase	E_val: 1.00E-163	ISS

Expression Patterns of Glyma08g15000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g15000 not represented in the dataset	Glyma08g15000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g15000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g141800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g15000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g15000

Limit To All Plant Sequences

>Glyma08g15000.1   sequence type=CDS   gene model=Glyma08g15000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGATTTTCATTTGCGCATTAAACGAGAATTAGGGTTTGTAGTGCAGCAGGAAGAAGCAATAATGGCGCCGAAGATAACACGTAAGGTTAGCAGAAACCCCGAATTGATAAGGGGAATCGGAAAGTACTCGAGGTCTCAAATGTACCACAAGAGGGGCATTTGGGCTATCAAGGCCAAAAACGGTGGCGTTTTACCTCGCCACGGCCCTAAACCCAAACCTGAAACTCCCGCTGAAAAACCACCCAAATTTTACCCTGCTGACGATGTCAAGAAACCCCTTGTCAACAAGCACAAACCCAAACCCGCGAAGCTCAGGGCTAGCATTACTCCCGGGACAGTGTTGATTCTTCTTGCCGGTAGATTTAAGGGAAAGAGGGTCGTCTTTTTGAAGCAGCTTCCTTCTGGGTTGCTTCTTGTAACTGGTCCTTTCAAGATTAATGGAGTTCCTTTGAGACGTGTGAATCAGTCCTATGTTATTGGCACTTCAACCAAAGCAAATGTCTCTGCTGTTAATGTCGAACAGTTTGATGACAAATACTTTACAAAGGAAGCCCAGAAGAAGAAGAAGGGAGAGGGCGAATTCTTTGAGGCAGAGAAGGAGGAAAAGAGTGTGTTGCCCCAGCAGAAGAAAGATGACCAGAAAACTGTTGACTCTGCGTTGATAAAAGCCATCGAGAGTGTTCCAGACTTGAAGACTTATCTGGGTGCCAGGTTTTCTCTAAAGGCTGGCGTGAAACCTCATGAGCTAGTCTTCTAG

Predicted protein sequences of Glyma08g15000

Limit To All Plant Sequences

>Glyma08g15000.1   sequence type=predicted peptide   gene model=Glyma08g15000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDFHLRIKRELGFVVQQEEAIMAPKITRKVSRNPELIRGIGKYSRSQMYHKRGIWAIKAKNGGVLPRHGPKPKPETPAEKPPKFYPADDVKKPLVNKHKPKPAKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKANVSAVNVEQFDDKYFTKEAQKKKKGEGEFFEAEKEEKSVLPQQKKDDQKTVDSALIKAIESVPDLKTYLGARFSLKAGVKPHELVF*

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