SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G21940 | AT | Annotation by Michelle Graham. TAIR10: shikimate kinase 1 | chr2:9351106-9352881 FORWARD LENGTH=304 | SoyBase | E_val: 3.00E-112 | ISS |
| GO:0006744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquinone biosynthetic process | SoyBase | N/A | ISS |
| GO:0019632 | GO-bp | Annotation by Michelle Graham. GO Biological Process: shikimate metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004765 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: shikimate kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| PTHR21087 | Panther | SHIKIMATE KINASE | JGI | ISS | |
| PF01202 | PFAM | Shikimate kinase | JGI | ISS | |
| UniRef100_B9VU88 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Shikimate kinase n=2 Tax=Vitis vinifera RepID=B9VU88_VITVI | SoyBase | E_val: 2.00E-123 | ISS |
| UniRef100_I1KT94 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KT94_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g14980 not represented in the dataset |
Glyma08g14980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g31730 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g141500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g14980.2 sequence type=transcript gene model=Glyma08g14980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATTAATTTATTTTTTCATTTGTTAGTTACTACAAAAATTCGAGGAGTGGATCATGAAAATTGAATTGGATCTTTATCCATAAGAAACAGAATGAGAGAAAGAAAAAGGATGAGAAAACCATTTCAGAATTCATAATCATACCTTTTTCCACTCTGACGCCATTTTATTATTCATTCATATTAATATTAGGCTCTCACCCTCCATTCCAATTGCTATTAGATTCTGCTTCCATTTTTTTTTTCTCTCTACACCTCTTCTTCTTCACTTCCTCTTTACTGTTTGTTACTTCAATTTTGTGATTCGTTCTTTCTGGATTCAATTGAGTAAAAATCTGCGTGGTTTGAGCAATGGATGTTAAAGCTGCGCCGAGGTTACAACTTTCAGCGGTGGTTCAACCCGAAAGTATTGGAAGAAGACCACCCAGCACATGTCGTTTGGGTGTGTCTCGGGAACCGCAGAGCCTTCGGGTTTTTGTTTCGTCAACGATGATGCGCCGCAGAACAACCGCTTTGGAGGTTTCCTGTTCTTACGGCAACATTTCAGCTTCAATATTGGAATCTGGAAGTGTTCGTGCTCCTCTTGATGAAGAGCTGATTCTAAAGAATAGATCGCAAGAGATCCAGCCATATTTAAATGGACGCTGTATTTATCTTGTTGGAATGATGGGCTCTGGGAAAACAACGGTGGGGAAGATAATGTCACAAGTGCTTGGTTATTCATTTTGTGATAGTGATGCATTGGTGGAGGAGGAGGTTGGTGGAAACTCTGTAGCTGATATATTCAAGCAACATGGTGAAACTTTCTTTCGTAATAAGGAGACTGAGGTGTTGCATAAGCTATCCCTGATGCATCAACTTGTTATTTCTACTGGTGGAGGTGCTGTTACAAGGCCCATCAATTGGAAATATATGCACAAGGGAGTTAGTGTTTGGTTGGATGTACCAGTGGAAGCCCTGGCACAGAGAATTGCAGCTGTAGGAACTAATTCTCGCCCCCTTCTACACTATGAAGCAGGAGATCCTTACACACGGATATAGCAATAAAACTGGGCAAAAGAGATGTGTCCGAATTGTCTCCAACAGATATTGCAATTGAGGCGCTAGAACAAATTGACAACTTTTTGAAGGGGGAAGGGGGCCGCTATGCAGAATGCTAGTACAAGCTTTGGTTACAAGCTTCTTTTTGATTGTTCATATTTTTTTTTATGCAATTGCGATTAAGGTCATGCTGTCGACCTCGCTTTTGGTAAAAAAAAAAAAAGGTGGTAATGCAACATGGCACTTGTTTATGCATAATTTGTGTTGGCAAATGGGCAAAATCCAACAGCCAATTGCAACAACATTTAATTTATGTTCTGTTTATTGTTGAATGTTGATGTGTGTGTGTATATATACTGGAGAACGAAGTGTTGTAATCGGAGTTGGGTTGATCAATTTATGTATGCCCTCCTCTAAAGAGGTTTGTATGTTGTAAAGTGACACGCATATTTTAAATTCTTCTTTATCTTATATTTATCTCCCATGCGTGCATTTAAGGACATCTTATTTCATATCATTAGGTTGATATCATATAAATAAGAGTTTTGTG
>Glyma08g14980.1 sequence type=CDS gene model=Glyma08g14980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGTTAAAGCTGCGCCGAGGTTACAACTTTCAGCGGTGGTTCAACCCGAAAGTATTGGAAGAAGACCACCCAGCACATGTCGTTTGGGTGTGTCTCGGGAACCGCAGAGCCTTCGGGTTTTTGTTTCGTCAACGATGATGCGCCGCAGAACAACCGCTTTGGAGGTTTCCTGTTCTTACGGCAACATTTCAGCTTCAATATTGGAATCTGGAAGTGTTCGTGCTCCTCTTGATGAAGAGCTGATTCTAAAGAATAGATCGCAAGAGATCCAGCCATATTTAAATGGACGCTGTATTTATCTTGTTGGAATGATGGGCTCTGGGAAAACAACGGTGGGGAAGATAATGTCACAAGTGCTTGGTTATTCATTTTGTGATAGTGATGCATTGGTGGAGGAGGAGGTTGGTGGAAACTCTGTAGCTGATATATTCAAGCAACATGGTGAAACTTTCTTTCGTAATAAGGAGACTGAGGTGTTGCATAAGCTATCCCTGATGCATCAACTTGTTATTTCTACTGGTGGAGGTGCTGTTACAAGGCCCATCAATTGGAAATATATGCACAAGGGAGTTAGTGTTTGGTTGGATGTACCAGTGGAAGCCCTGGCACAGAGAATTGCAGCTGTAGGAACTAATTCTCGCCCCCTTCTACACTATGAAGCAGGAGATCCTTACACACGGGCTTTTATGCGTTTGTCTGCTCTTTTTGAAGAGAGAGGTGAAGCATACGCCAACGCCAATGCCAGGGTCTCATTAAAAAATATAGCAATAAAACTGGGCAAAAGAGATGTGTCCGAATTGTCTCCAACAGATATTGCAATTGAGGCGCTAGAACAAATTGACAACTTTTTGAAGGGGGAAGGGGGCCGCTATGCAGAATGCTAG >Glyma08g14980.2 sequence type=CDS gene model=Glyma08g14980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGTTAAAGCTGCGCCGAGGTTACAACTTTCAGCGGTGGTTCAACCCGAAAGTATTGGAAGAAGACCACCCAGCACATGTCGTTTGGGTGTGTCTCGGGAACCGCAGAGCCTTCGGGTTTTTGTTTCGTCAACGATGATGCGCCGCAGAACAACCGCTTTGGAGGTTTCCTGTTCTTACGGCAACATTTCAGCTTCAATATTGGAATCTGGAAGTGTTCGTGCTCCTCTTGATGAAGAGCTGATTCTAAAGAATAGATCGCAAGAGATCCAGCCATATTTAAATGGACGCTGTATTTATCTTGTTGGAATGATGGGCTCTGGGAAAACAACGGTGGGGAAGATAATGTCACAAGTGCTTGGTTATTCATTTTGTGATAGTGATGCATTGGTGGAGGAGGAGGTTGGTGGAAACTCTGTAGCTGATATATTCAAGCAACATGGTGAAACTTTCTTTCGTAATAAGGAGACTGAGGTGTTGCATAAGCTATCCCTGATGCATCAACTTGTTATTTCTACTGGTGGAGGTGCTGTTACAAGGCCCATCAATTGGAAATATATGCACAAGGGAGTTAGTGTTTGGTTGGATGTACCAGTGGAAGCCCTGGCACAGAGAATTGCAGCTGTAGGAACTAATTCTCGCCCCCTTCTACACTATGAAGCAGGAGATCCTTACACACGGATATAG
>Glyma08g14980.1 sequence type=predicted peptide gene model=Glyma08g14980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDVKAAPRLQLSAVVQPESIGRRPPSTCRLGVSREPQSLRVFVSSTMMRRRTTALEVSCSYGNISASILESGSVRAPLDEELILKNRSQEIQPYLNGRCIYLVGMMGSGKTTVGKIMSQVLGYSFCDSDALVEEEVGGNSVADIFKQHGETFFRNKETEVLHKLSLMHQLVISTGGGAVTRPINWKYMHKGVSVWLDVPVEALAQRIAAVGTNSRPLLHYEAGDPYTRAFMRLSALFEERGEAYANANARVSLKNIAIKLGKRDVSELSPTDIAIEALEQIDNFLKGEGGRYAEC* >Glyma08g14980.2 sequence type=predicted peptide gene model=Glyma08g14980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDVKAAPRLQLSAVVQPESIGRRPPSTCRLGVSREPQSLRVFVSSTMMRRRTTALEVSCSYGNISASILESGSVRAPLDEELILKNRSQEIQPYLNGRCIYLVGMMGSGKTTVGKIMSQVLGYSFCDSDALVEEEVGGNSVADIFKQHGETFFRNKETEVLHKLSLMHQLVISTGGGAVTRPINWKYMHKGVSVWLDVPVEALAQRIAAVGTNSRPLLHYEAGDPYTRI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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