Report for Sequence Feature Glyma08g14960
Feature Type: gene_model
Chromosome: Gm08
Start: 10887310
stop: 10889617
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g14960
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G21970 AT
Annotation by Michelle Graham. TAIR10: stress enhanced protein 2 | chr2:9357188-9357874 REVERSE LENGTH=202
SoyBase E_val: 2.00E-73 ISS
GO:0009765 GO-bp
Annotation by Michelle Graham. GO Biological Process: photosynthesis, light harvesting
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009535 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane
SoyBase N/A ISS
GO:0016168 GO-mf
Annotation by Michelle Graham. GO Molecular Function: chlorophyll binding
SoyBase N/A ISS
UniRef100_B9H5A9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Stress enhanced protein 2 n=1 Tax=Populus trichocarpa RepID=B9H5A9_POPTR
SoyBase E_val: 1.00E-88 ISS
UniRef100_I1KT92 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KT92_SOYBN
SoyBase E_val: 3.00E-142 ISS
Expression Patterns of Glyma08g14960
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g14960
Paralog Evidence Comments
Glyma05g31710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g14960 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g141300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g14960
Coding sequences of Glyma08g14960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g14960.1 sequence type=CDS gene model=Glyma08g14960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCATCTGCGACGCGTCTGGTGCACTGCGAGCTGCGCTCGGCGAGGCCCGCGGTTCGGCCGAGGGAACCGGCCGGTCCGGTTCAGGTTACGATCCCCAAACCCAAACCCAAAGCGGCGGAGGCGGAAGGCGCGAACATCGTTTTGCAGCCGCGGTTGTGCACTCTCAGATCCTACGGTTCGGATCGAGCCGGGGTGCTTATCAAGACTCGCAAGGAGGGTGACCATGATGACGTGTCACCCTTCTTCGCCGCGCTTTCCGACTATATTGAGAGCTCTAAGAAAAGTCAAGATTTTGAGATCATCTCTGGTCGTCTAGCTATGATGGTGTTTGCAGCGACGGTGACAATGGAAGTGGTGACAGGGAACTCTGTGTTCAGAAAGATGGATATTGAAGGAATCACAGAGGCTGGTGGGGTGTGTTTGGGTGCAGTAACTTGCGCAGCACTCTTTGCATGGTTCTGCAGTGCCCGAAACAGAGTTGGTAGAATCTTCACCGTAAGCTGCAACGCATTCATTGACTCTGTAATTGACCAAATCATCGATGGTTTGTTCTATGAAGGCGACCCTACTGATTGGCCTGATGAACCGTGA
Predicted protein sequences of Glyma08g14960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g14960.1 sequence type=predicted peptide gene model=Glyma08g14960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASATRLVHCELRSARPAVRPREPAGPVQVTIPKPKPKAAEAEGANIVLQPRLCTLRSYGSDRAGVLIKTRKEGDHDDVSPFFAALSDYIESSKKSQDFEIISGRLAMMVFAATVTMEVVTGNSVFRKMDIEGITEAGGVCLGAVTCAALFAWFCSARNRVGRIFTVSCNAFIDSVIDQIIDGLFYEGDPTDWPDEP*