Glyma08g14790 - SoyBase

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Report for Sequence Feature Glyma08g14790

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10774180
stop:	10779559
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g14790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10060	AT	Annotation by Michelle Graham. TAIR10: ENTH/VHS family protein \| chr5:3145994-3148049 REVERSE LENGTH=469	SoyBase	E_val: 1.00E-145	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2669	KOG	Regulator of nuclear mRNA	JGI		ISS
PTHR12460	Panther	UNCHARACTERIZED	JGI		ISS
PF04818	PFAM	Protein of unknown function, DUF618	JGI		ISS
UniRef100_G7J4E0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Regulation of nuclear pre-mRNA domain-containing protein 1B n=1 Tax=Medicago truncatula RepID=G7J4E0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338898	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338898 related cluster n=1 Tax=unknown RepID=UPI0002338898	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g14790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g14790

Paralog	Evidence	Comments
Glyma05g31560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g14790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g139600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g14790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g14790

Limit To All Plant Sequences

>Glyma08g14790.4   sequence type=transcript   gene model=Glyma08g14790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACGGCTTTTAGGCAAAGTCGCAGAGTTTGCGCCAAATGGACAAACCAAACCCCGCAAACGTAAACCTTTAACTTTAACTGCTTCCCTTCTCCTCCTTCTTCTTCTGTAACTCTCCTTCATTCTATTTCTCATTCATATTCATATAAAGCTTCATCACTTTCCCCAAAACACTGTTGTTTCTACCGGTTCCGCGGCATTGGTTGGCTGGTATGAATAGTGTGTTCAGCGAGCAGATACTCGCGGACAAGCTGTCCAAGCTCAACAGCACCCAGCAGTGCATTGAAACTTTATCACATTGGTGTATATTTCACCGAAGCAAAGCAGAGCTGGTAGTGGGAACATGGAATAAACAGTTTCACAATTCAGAGAAGGTTCAGCGAGTCCCCCTTCTGTATCTTGCAAATGATATCCTGCAAAACAGCAGGCGTAAAGGAAATGAATTTGTGACCGAGTTTTGGAAGGTTCTTCCCTCAGCACTTAAGGATGTTCTTGAGAAAGGTGATGATCAAGAAAATCGTGCAGTATTTAGACTGGTTGATATATGGGAGGAAAGGAGAGTGTTTGGATCTCAGGCTAAGAGCCTTAAAAATGTAATACTTGGAGAAGAAGCACCTCCACAGTTGGAATTCAACAAAAAGCGGTCCCGTTCTGTTAGAATTGTGAAAAAGGATTCTCGTTCCATCAAAACGAAATTGTCCATTGGAGGTACAGCAGAAAAAATAGTCTCAGCCTTTCATACGGTGCTTAATGAACATTCCAATGAAGATGCAGAGATGAGTAGATGCAAGTCAGCTGTTCATCGTGTGAGGAAGATGGAAAAAAATGTTGATATTGCATGCGCTGTTGTAAAGGACCCTAAGCGAAAAACTTTGTCCAAGGAGCTAGTGGAGGAAGAAAATATTTTGAAAGAATGCATTGAAAATCTCAAATTAGTTGAAGCAAGTAGAACAGCACTTGTTATTCACTTAAAAGAAGCTTTGCATGAGCAGGAATCTGAGCTGGAGAATGTTCGCACTCAGATTCAGGTAGCGCAAGCACAAGTAGAAGAGGCTAGCTACATGCGGAAGCGACTTGATGATGAAGATTCTTCATATAAAGCCTCAATTTCAACGACTTCACTTACTGATGTGAATACAAAATCAGAAGCAGCAACTAAGAAGTCAGCTGCTGCAATTGCAGCTGAGGTTGCAGATAAGCTAACAGCTTCTACGTCATCTCAGTTAATCATGACTTCTGTTCTCTCAACATTTGCAGCGGAAGAGGCAAAAAGTGCTTGTCTAACTTCTGAGTCCATGTCAAAACCTGAGAAGTCAATACCTATATCAGATCCAAATGTTTTTGTGTCTTCACAACAGTTAATTGCCACACCCAATCATTCATATCCTTCAGTTTTGGTACCTCAACCCACCTTGCAGAATCCAGCTGCTGCATCACAGGGTCAATATCAAATGCTTTGTAATTCATCCTCCCAACATTATTTGCAATCAACAGGAGGTGTCATTTCTTCTTATGGTTATGGTAGCATCACACCATTACCACCGGGACCACTCCCACCCCATATGGTGGGTCCAGTGGTGCCTTTGACGCATCAGGCAATGCAAATAACTCAGCAGCAGCCAACACCTATAGCTCAGCATCAACCAATAAAAATGACACAACAAGCCCCAGCACCTCCTAGTTTCCGACCACTTCAACCGCCAGGAATGGTGTACTATGGTAATCATCAGCATTCTATATGAGACCTGCAGTAACTAGAATTTAATCAAAATTATCTGTTTTAAACAAGCAAAATCTTGAGATTATTTAATTTTGAGCAAACAGTATGCTCACTGGGGTTGAGTTGGAAAATGCGTGGACGCCAGGCTAGCACCCTGGTCCCTGGGATGTTAAAGGAAAGTATCACAACTCAAGATTATAAATGCTTCAAACAAATTTTTTGAGACTGAGTGAGCAGTGAGTTCTCATGAGTAAGGTAGTGTTTTCAGAGATATTTTGCCAGAAATTTTTTGATGATAATGTACTTGTACTGTACATACTTGGCTAATCAAATAATTATTGGATTATATTAGATAAAGGAAACTCTGATGAGGCAGAGTGTCTTTCTCGTCCCCCTCATATAAATTTGTGTTTGATGTTGTGCTTGGTTGATTGGAGCAACTTTCACAGTTTTACATCCCCCAACTCTGAGCTTTGTCAATTAGATGAAACTAATTGATATCTAAAGGAGGAAATGTGAAACCAGGGTGTCGTTCAACTTCAGCACAGTAAGTCCTTATGCCTCTCCTGTGGTGTTACATGGAAGAAGGTTGGCACTTGGAGGCTGTATGTTGACTACAGAAGCTCCGCCAAGCATACCTTAAGGGCCAGGTTAGCATGTATGATAAGGTTCAATAGTATGAATCTTGATAGTGTTTGACTGTAGAAGGTCCAACATTCAATAATTAGAGTAGTCATTGAATCAACGGAGACATTTATTTGCAGTTTACTTGTTTGACCATAATTGAATTATGAATAAATTGATGATAATTAAATATAAT

Coding sequences of Glyma08g14790

Limit To All Plant Sequences

>Glyma08g14790.3   sequence type=CDS   gene model=Glyma08g14790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAGTGTGTTCAGCGAGCAGATACTCGCGGACAAGCTGTCCAAGCTCAACAGCACCCAGCAGTGCATTGAAACTTTATCACATTGGTGTATATTTCACCGAAGCAAAGCAGAGCTGGTAGTGGGAACATGGAATAAACAGTTTCACAATTCAGAGAAGGTTCAGCGAGTCCCCCTTCTGTATCTTGCAAATGATATCCTGCAAAACAGCAGGCGTAAAGGAAATGAATTTGTGACCGAGTTTTGGAAGGTTCTTCCCTCAGCACTTAAGGATGTTCTTGAGAAAGGTGATGATCAAGAAAATCGTGCAGTATTTAGACTGGTTGATATATGGGAGGAAAGGAGAGTGTTTGGATCTCAGGCTAAGAGCCTTAAAAATGTAATACTTGGAGAAGAAGCACCTCCACAGTTGGAATTCAACAAAAAGCGGTCCCGTTCTGTTAGAATTGTGAAAAAGGATTCTCGTTCCATCAAAACGAAATTGTCCATTGGAGGTACAGCAGAAAAAATAGTCTCAGCCTTTCATACGGTGCTTAATGAACATTCCAATGAAGATGCAGAGATGAGTAGATGCAAGTCAGCTGTTCATCGTGTGAGGAAGATGGAAAAAAATGTTGATATTGCATGCGCTGTTGTAAAGGACCCTAAGCGAAAAACTTTGTCCAAGGAGCTAGTGGAGGAAGAAAATATTTTGAAAGAATGCATTGAAAATCTCAAATTAGTTGAAGCAAGTAGAACAGCACTTGTTATTCACTTAAAAGAAGCTTTGCATGAGCAGGAATCTGAGCTGGAGAATGTTCGCACTCAGATTCAGGTAGCGCAAGCACAAGTAGAAGAGGCTAGCTACATGCGGAAGCGACTTGATGATGAAGATTCTTCATATAAAGCCTCAATTTCAACGACTTCACTTACTGATGTGAATACAAAATCAGAAGCAGCAACTAAGAAGTCAGCTGCTGCAATTGCAGCTGAGGTTGCAGATAAGCTAACAGCTTCTACGTCATCTCAGTTAATCATGACTTCTGTTCTCTCAACATTTGCAGCGGAAGAGGCAAAAAGTGCTTGTCTAACTTCTGAGTCCATGTCAAAACCTGAGAAGTCAATACCTATATCAGATCCAAATGTTTTTGTGTCTTCACAACAGTTAATTGCCACACCCAATCATTCATATCCTTCAGTTTTGGTACCTCAACCCACCTTGCAGAATCCAGCTGCTGCATCACAGGGTCAATATCAAATGCTTTGTAATTCATCCTCCCAACATTATTTGCAATCAACAGGAGGTGTCATTTCTTCTTATGGTTATGGTAGCATCACACCATTACCACCGGGACCACTCCCACCCCATATGGTGGGTCCAGTGGTGCCTTTGACGCATCAGGCAATGCAAATAACTCAGCAGCAGCCAACACCTATAGCTCAGCATCAACCAATAAAAATGACACAACAAGCCCCAGCACCTCCTAGTTTCCGACCACTTCAACCGCCAGGAATGGTGTACTATGGTAATCATCAGCATTCTATATGA

>Glyma08g14790.4   sequence type=CDS   gene model=Glyma08g14790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAGTGTGTTCAGCGAGCAGATACTCGCGGACAAGCTGTCCAAGCTCAACAGCACCCAGCAGTGCATTGAAACTTTATCACATTGGTGTATATTTCACCGAAGCAAAGCAGAGCTGGTAGTGGGAACATGGAATAAACAGTTTCACAATTCAGAGAAGGTTCAGCGAGTCCCCCTTCTGTATCTTGCAAATGATATCCTGCAAAACAGCAGGCGTAAAGGAAATGAATTTGTGACCGAGTTTTGGAAGGTTCTTCCCTCAGCACTTAAGGATGTTCTTGAGAAAGGTGATGATCAAGAAAATCGTGCAGTATTTAGACTGGTTGATATATGGGAGGAAAGGAGAGTGTTTGGATCTCAGGCTAAGAGCCTTAAAAATGTAATACTTGGAGAAGAAGCACCTCCACAGTTGGAATTCAACAAAAAGCGGTCCCGTTCTGTTAGAATTGTGAAAAAGGATTCTCGTTCCATCAAAACGAAATTGTCCATTGGAGGTACAGCAGAAAAAATAGTCTCAGCCTTTCATACGGTGCTTAATGAACATTCCAATGAAGATGCAGAGATGAGTAGATGCAAGTCAGCTGTTCATCGTGTGAGGAAGATGGAAAAAAATGTTGATATTGCATGCGCTGTTGTAAAGGACCCTAAGCGAAAAACTTTGTCCAAGGAGCTAGTGGAGGAAGAAAATATTTTGAAAGAATGCATTGAAAATCTCAAATTAGTTGAAGCAAGTAGAACAGCACTTGTTATTCACTTAAAAGAAGCTTTGCATGAGCAGGAATCTGAGCTGGAGAATGTTCGCACTCAGATTCAGGTAGCGCAAGCACAAGTAGAAGAGGCTAGCTACATGCGGAAGCGACTTGATGATGAAGATTCTTCATATAAAGCCTCAATTTCAACGACTTCACTTACTGATGTGAATACAAAATCAGAAGCAGCAACTAAGAAGTCAGCTGCTGCAATTGCAGCTGAGGTTGCAGATAAGCTAACAGCTTCTACGTCATCTCAGTTAATCATGACTTCTGTTCTCTCAACATTTGCAGCGGAAGAGGCAAAAAGTGCTTGTCTAACTTCTGAGTCCATGTCAAAACCTGAGAAGTCAATACCTATATCAGATCCAAATGTTTTTGTGTCTTCACAACAGTTAATTGCCACACCCAATCATTCATATCCTTCAGTTTTGGTACCTCAACCCACCTTGCAGAATCCAGCTGCTGCATCACAGGGTCAATATCAAATGCTTTGTAATTCATCCTCCCAACATTATTTGCAATCAACAGGAGGTGTCATTTCTTCTTATGGTTATGGTAGCATCACACCATTACCACCGGGACCACTCCCACCCCATATGGTGGGTCCAGTGGTGCCTTTGACGCATCAGGCAATGCAAATAACTCAGCAGCAGCCAACACCTATAGCTCAGCATCAACCAATAAAAATGACACAACAAGCCCCAGCACCTCCTAGTTTCCGACCACTTCAACCGCCAGGAATGGTGTACTATGGTAATCATCAGCATTCTATATGA

Predicted protein sequences of Glyma08g14790

Limit To All Plant Sequences

>Glyma08g14790.3   sequence type=predicted peptide   gene model=Glyma08g14790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSVFSEQILADKLSKLNSTQQCIETLSHWCIFHRSKAELVVGTWNKQFHNSEKVQRVPLLYLANDILQNSRRKGNEFVTEFWKVLPSALKDVLEKGDDQENRAVFRLVDIWEERRVFGSQAKSLKNVILGEEAPPQLEFNKKRSRSVRIVKKDSRSIKTKLSIGGTAEKIVSAFHTVLNEHSNEDAEMSRCKSAVHRVRKMEKNVDIACAVVKDPKRKTLSKELVEEENILKECIENLKLVEASRTALVIHLKEALHEQESELENVRTQIQVAQAQVEEASYMRKRLDDEDSSYKASISTTSLTDVNTKSEAATKKSAAAIAAEVADKLTASTSSQLIMTSVLSTFAAEEAKSACLTSESMSKPEKSIPISDPNVFVSSQQLIATPNHSYPSVLVPQPTLQNPAAASQGQYQMLCNSSSQHYLQSTGGVISSYGYGSITPLPPGPLPPHMVGPVVPLTHQAMQITQQQPTPIAQHQPIKMTQQAPAPPSFRPLQPPGMVYYGNHQHSI*

>Glyma08g14790.4   sequence type=predicted peptide   gene model=Glyma08g14790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSVFSEQILADKLSKLNSTQQCIETLSHWCIFHRSKAELVVGTWNKQFHNSEKVQRVPLLYLANDILQNSRRKGNEFVTEFWKVLPSALKDVLEKGDDQENRAVFRLVDIWEERRVFGSQAKSLKNVILGEEAPPQLEFNKKRSRSVRIVKKDSRSIKTKLSIGGTAEKIVSAFHTVLNEHSNEDAEMSRCKSAVHRVRKMEKNVDIACAVVKDPKRKTLSKELVEEENILKECIENLKLVEASRTALVIHLKEALHEQESELENVRTQIQVAQAQVEEASYMRKRLDDEDSSYKASISTTSLTDVNTKSEAATKKSAAAIAAEVADKLTASTSSQLIMTSVLSTFAAEEAKSACLTSESMSKPEKSIPISDPNVFVSSQQLIATPNHSYPSVLVPQPTLQNPAAASQGQYQMLCNSSSQHYLQSTGGVISSYGYGSITPLPPGPLPPHMVGPVVPLTHQAMQITQQQPTPIAQHQPIKMTQQAPAPPSFRPLQPPGMVYYGNHQHSI*

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