Glyma08g14750 - SoyBase

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Report for Sequence Feature Glyma08g14750

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10733673
stop:	10735374
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g14750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39700	AT	Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein \| chr4:18424265-18424906 FORWARD LENGTH=158	SoyBase	E_val: 8.00E-71	ISS
GO:0030001	GO-bp	Annotation by Michelle Graham. GO Biological Process: metal ion transport	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1603	KOG	Copper chaperone	JGI		ISS
PTHR22814	Panther	COPPER TRANSPORT PROTEIN ATOX1-RELATED	JGI		ISS
PTHR22814:SF34	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00403	PFAM	Heavy-metal-associated domain	JGI		ISS
UniRef100_B9SSL2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Metal ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9SSL2_RICCO	SoyBase	E_val: 6.00E-88	ISS
UniRef100_I1KT64	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KT64_SOYBN	SoyBase	E_val: 1.00E-109	ISS

Expression Patterns of Glyma08g14750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g14750 not represented in the dataset	Glyma08g14750 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g14750

Paralog	Evidence	Comments
Glyma05g31520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g14750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g139200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g14750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g14750

Limit To All Plant Sequences

>Glyma08g14750.2   sequence type=transcript   gene model=Glyma08g14750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTACTCAACTCCTCCCAATTAAAGTTCTTTGGGACACATTCAACAAGTTTAGTTCACCAATCAACCTTGTTCCTATATTCACATTCATATCATATTATAAATTACATTGACAAGCCTTCTCCACTTTTTTTTTTCACTTCTAAACATTCAGAAATGGGAGTTGGAGGCACACTGGAGTACTTGTCTGATCTAATGGGCAGTGGCCACCACCACCACAAGAAGAAGAAGAAGCAGTTCCAAACCGTGGAGCTAAAGGTGAGAATGGATTGTGATGGTTGTGAGCTTAAGGTCAAGAACGCTCTCTCCTCACTAAGTGGGGTGAAATCTGTGGAGATAAACCGAAAACAGCAGAAAGTGACAGTAACTGGGTATGTTGAACCAAACAAGGTGCTGAAGAAGGCGAAATCAACAGGGAAGAAGGCTGAGATTTGGCCCTATGTGCCTTACAACTTGGTGGCTCATCCATATGCAGTTCCTTCTTATGACAAGAAGGCTCCTCCTGGTTATGTGAGGAGAGTGGAGGCCCCTGCTCACACTGGAATCATCACAAGATATGAAGACCCTTACATCACCATGTTCAGTGATGATAACCCAAATGCATGCTCTATCATGTAGACAAAAAAAAGATATGCTTTTTCTCATAGCACTGTAAATTTTCAAATTTTAATGCAGTGTTTTTTTTTTGTTCTGCTCTATTTTCAAGTTCTTGTTGCTTTCCTGGAGTGTTGTCTTCTTTTTTGGTTTTTACATAAAAAGATGAGAAGAGACGTTGCTGTGATCATTGTTTTTCTATTTTTTTGCTTCAGTGTTCCAGATTGTACACTGTACTTGCCTCCTTGTAGGTTAGCAGTAGGTAGTTTCGGTGGGCCTTGACCTTGACCTTGAGATATAAATATGATATTGTTTTTTTGTGGCTATGGCCTTCTTTTCTTTCTACCGTAAA

>Glyma08g14750.3   sequence type=transcript   gene model=Glyma08g14750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCGCAGAGCAGAGCAACGTTTTTTTATTTATTATTATTATTAGAAGGTAAGGAACGAATCCATTTATTTTTTAAGAAAGAAAAAATGGGAGTTGGAGGCACACTGGAGTACTTGTCTGATCTAATGGGCAGTGGCCACCACCACCACAAGAAGAAGAAGAAGCAGTTCCAAACCGTGGAGCTAAAGGTGAGAATGGATTGTGATGGTTGTGAGCTTAAGGTCAAGAACGCTCTCTCCTCACTAAGTGGGGTGAAATCTGTGGAGATAAACCGAAAACAGCAGAAAGTGACAGTAACTGGGTATGTTGAACCAAACAAGGTGCTGAAGAAGGCGAAATCAACAGGGAAGAAGGCTGAGATTTGGCCCTATGTGCCTTACAACTTGGTGGCTCATCCATATGCAGTTCCTTCTTATGACAAGAAGGCTCCTCCTGGTTATGTGAGGAGAGTGGAGGCCCCTGCTCACACTGGAATCATCACAAGATATGAAGACCCTTACATCACCATGTTCAGTGATGATAACCCAAATGCATGCTCTATCATGTAGACAAAAAAAAGATATGCTTTTTCTCATAGCACTGTAAATTTTCAAATTTTAATGCAGTGTTTTTTTTTTGTTCTGCTCTATTTTCAAGTTCTTGTTGCTTTCCTGGAGTGTTGTCTTCTTTTTTGGTTTTTACATAAAAAGATGAGAAGAGACGTTGCTGTGATCATTGTTTTTCTATTTTTTTGCTTCAGTGTTCCAGATTGTACACTGTACTTGCCTCCTTGTAGGTTAGCAGTAGGTAGTTTCGGTGGGCCTTGACCTTGACCTTGAGATATAAATATGATATTGTTTTTTTGTGGCT

Coding sequences of Glyma08g14750

Limit To All Plant Sequences

>Glyma08g14750.1   sequence type=CDS   gene model=Glyma08g14750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTTGGAGGCACACTGGAGTACTTGTCTGATCTAATGGGCAGTGGCCACCACCACCACAAGAAGAAGAAGAAGCAGTTCCAAACCGTGGAGCTAAAGGTGAGAATGGATTGTGATGGTTGTGAGCTTAAGGTCAAGAACGCTCTCTCCTCACTAAGTGGGGTGAAATCTGTGGAGATAAACCGAAAACAGCAGAAAGTGACAGTAACTGGGTATGTTGAACCAAACAAGGTGCTGAAGAAGGCGAAATCAACAGGGAAGAAGGCTGAGATTTGGCCCTATGTGCCTTACAACTTGGTGGCTCATCCATATGCAGTTCCTTCTTATGACAAGAAGGCTCCTCCTGGTTATGTGAGGAGAGTGGAGGCCCCTGCTCACACTGGAATCATCACAAGATATGAAGACCCTTACATCACCATGTTCAGTGATGATAACCCAAATGCATGCTCTATCATGTAG

>Glyma08g14750.2   sequence type=CDS   gene model=Glyma08g14750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTTGGAGGCACACTGGAGTACTTGTCTGATCTAATGGGCAGTGGCCACCACCACCACAAGAAGAAGAAGAAGCAGTTCCAAACCGTGGAGCTAAAGGTGAGAATGGATTGTGATGGTTGTGAGCTTAAGGTCAAGAACGCTCTCTCCTCACTAAGTGGGGTGAAATCTGTGGAGATAAACCGAAAACAGCAGAAAGTGACAGTAACTGGGTATGTTGAACCAAACAAGGTGCTGAAGAAGGCGAAATCAACAGGGAAGAAGGCTGAGATTTGGCCCTATGTGCCTTACAACTTGGTGGCTCATCCATATGCAGTTCCTTCTTATGACAAGAAGGCTCCTCCTGGTTATGTGAGGAGAGTGGAGGCCCCTGCTCACACTGGAATCATCACAAGATATGAAGACCCTTACATCACCATGTTCAGTGATGATAACCCAAATGCATGCTCTATCATGTAG

>Glyma08g14750.3   sequence type=CDS   gene model=Glyma08g14750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTTGGAGGCACACTGGAGTACTTGTCTGATCTAATGGGCAGTGGCCACCACCACCACAAGAAGAAGAAGAAGCAGTTCCAAACCGTGGAGCTAAAGGTGAGAATGGATTGTGATGGTTGTGAGCTTAAGGTCAAGAACGCTCTCTCCTCACTAAGTGGGGTGAAATCTGTGGAGATAAACCGAAAACAGCAGAAAGTGACAGTAACTGGGTATGTTGAACCAAACAAGGTGCTGAAGAAGGCGAAATCAACAGGGAAGAAGGCTGAGATTTGGCCCTATGTGCCTTACAACTTGGTGGCTCATCCATATGCAGTTCCTTCTTATGACAAGAAGGCTCCTCCTGGTTATGTGAGGAGAGTGGAGGCCCCTGCTCACACTGGAATCATCACAAGATATGAAGACCCTTACATCACCATGTTCAGTGATGATAACCCAAATGCATGCTCTATCATGTAG

Predicted protein sequences of Glyma08g14750

Limit To All Plant Sequences

>Glyma08g14750.1   sequence type=predicted peptide   gene model=Glyma08g14750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVGGTLEYLSDLMGSGHHHHKKKKKQFQTVELKVRMDCDGCELKVKNALSSLSGVKSVEINRKQQKVTVTGYVEPNKVLKKAKSTGKKAEIWPYVPYNLVAHPYAVPSYDKKAPPGYVRRVEAPAHTGIITRYEDPYITMFSDDNPNACSIM*

>Glyma08g14750.2   sequence type=predicted peptide   gene model=Glyma08g14750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVGGTLEYLSDLMGSGHHHHKKKKKQFQTVELKVRMDCDGCELKVKNALSSLSGVKSVEINRKQQKVTVTGYVEPNKVLKKAKSTGKKAEIWPYVPYNLVAHPYAVPSYDKKAPPGYVRRVEAPAHTGIITRYEDPYITMFSDDNPNACSIM*

>Glyma08g14750.3   sequence type=predicted peptide   gene model=Glyma08g14750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVGGTLEYLSDLMGSGHHHHKKKKKQFQTVELKVRMDCDGCELKVKNALSSLSGVKSVEINRKQQKVTVTGYVEPNKVLKKAKSTGKKAEIWPYVPYNLVAHPYAVPSYDKKAPPGYVRRVEAPAHTGIITRYEDPYITMFSDDNPNACSIM*

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