Glyma08g14740 - SoyBase

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Report for Sequence Feature Glyma08g14740

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10730304
stop:	10732465
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g14740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39710	AT	Annotation by Michelle Graham. TAIR10: FK506-binding protein 16-2 \| chr4:18427249-18428325 REVERSE LENGTH=217	SoyBase	E_val: 5.00E-97	ISS
GO:0000413	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein peptidyl-prolyl isomerization	SoyBase	N/A	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0018208	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptidyl-proline modification	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009543	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0010598	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: NAD(P)H dehydrogenase complex (plastoquinone)	SoyBase	N/A	ISS
GO:0003755	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005528	GO-mf	Annotation by Michelle Graham. GO Molecular Function: FK506 binding	SoyBase	N/A	ISS
GO:0031679	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NADH dehydrogenase (plastoquinone) activity	SoyBase	N/A	ISS
KOG0544	KOG	FKBP-type peptidyl-prolyl cis-trans isomerase	JGI		ISS
PTHR10516	Panther	FK506 BINDING PROTEIN	JGI		ISS
PTHR10516:SF15	Panther	FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	JGI		ISS
PF00254	PFAM	FKBP-type peptidyl-prolyl cis-trans isomerase	JGI		ISS
UniRef100_I1KT60	UniRef	Annotation by Michelle Graham. Best UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=I1KT60_SOYBN	SoyBase	E_val: 2.00E-151	ISS
UniRef100_I1KT60	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=I1KT60_SOYBN	SoyBase	E_val: 2.00E-151	ISS

Expression Patterns of Glyma08g14740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g14740 not represented in the dataset	Glyma08g14740 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g14740

Paralog	Evidence	Comments
Glyma05g31510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g14740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g139100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g14740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g14740

Limit To All Plant Sequences

>Glyma08g14740.2   sequence type=transcript   gene model=Glyma08g14740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGGACCCATGGCTGGGTTTGATATCCTGAGCGAGCCATAGAAAGAGTTGAATTAATAGAGATACAGATAACGTGAAACTGAAAGGAAAATGGCACTCTCAGTCTCCTCACCCTCATGCGTACGCGTTCCTTCATGTTTTTGGAAACCAAATGGCAAGAGTTGCAAAGAGCGTACTAAGGTTTCATGTGCAGCTCACAATGATAATAAGAATCCGTTGGTTGGAATCGGTATTGGGGTTGTAACGTCTTGTGTGATGGGTTTAACTGCATTGGATGCGGACGCCACGAGAATCGAATACTACGCAACAGTGGCAGAGCCTTTGTGTGAGTACAACTATGTTAAGTCTGGCCTCGGCTACTGCGATATTGCTGAGGGCTTCGGTGACGAAGCTCCACTGGGTGAGCTTATCAATGTTCACTATACTGCGAGATTCGCTGATGGGATAGTATTCGATAGCAGCTATAAACGTGCTAGACCTCTCACCATGCGCATTGGTGTGGGCAAGGTAATCAAGGGACTGGATCAGGGGATTTTAGGGGGTGAAGGAGTACCTCCAATGCGGATAGGTGGGAAACGCAAACTGCAGATTCCTCCGCACTTAGCATATGGCCCTGAACCTGCAGGGTGCTTCTCAGGTGACTGCAATATACCCGCCAATGCCACTCTTCTGTATGATATTAATTTTGTTGAGGTTTATTCGGGGAACAGATCAAAGTGAAGTCAGTCAAAACTGGTCAGATACATATATACATATGAACCACAGATGGATGGGGTGAGTTTCAAGATCTCCTTAGAATATTTATGTTCTTAAAATAACGGTTGAAATGATAGTTAAATCATTCATACTGTTGTGTTCAGATTACTTTGTGTATGCTTGTCCCCTAAACTTGTTGGTTTTCTTTCCTTAT

Coding sequences of Glyma08g14740

Limit To All Plant Sequences

>Glyma08g14740.1   sequence type=CDS   gene model=Glyma08g14740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTCTCAGTCTCCTCACCCTCATGCGTACGCGTTCCTTCATGTTTTTGGAAACCAAATGGCAAGAGTTGCAAAGAGCGTACTAAGGTTTCATGTGCAGCTCACAATGATAATAAGAATCCGTTGGTTGGAATCGGTATTGGGGTTGTAACGTCTTGTGTGATGGGTTTAACTGCATTGGATGCGGACGCCACGAGAATCGAATACTACGCAACAGTGGCAGAGCCTTTGTGTGAGTACAACTATGTTAAGTCTGGCCTCGGCTACTGCGATATTGCTGAGGGCTTCGGTGACGAAGCTCCACTGGGTGAGCTTATCAATGTTCACTATACTGCGAGATTCGCTGATGGGATAGTATTCGATAGCAGCTATAAACGTGCTAGACCTCTCACCATGCGCATTGGTGTGGGCAAGGTAATCAAGGGACTGGATCAGGGGATTTTAGGGGGTGAAGGAGTACCTCCAATGCGGATAGGTGGGAAACGCAAACTGCAGATTCCTCCGCACTTAGCATATGGCCCTGAACCTGCAGGGTGCTTCTCAGGTGACTGCAATATACCCGCCAATGCCACTCTTCTGTATGATATTAATTTTGTTGAGGTTTATTCGGGGAACAGATCAAAGTGA

>Glyma08g14740.2   sequence type=CDS   gene model=Glyma08g14740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTCTCAGTCTCCTCACCCTCATGCGTACGCGTTCCTTCATGTTTTTGGAAACCAAATGGCAAGAGTTGCAAAGAGCGTACTAAGGTTTCATGTGCAGCTCACAATGATAATAAGAATCCGTTGGTTGGAATCGGTATTGGGGTTGTAACGTCTTGTGTGATGGGTTTAACTGCATTGGATGCGGACGCCACGAGAATCGAATACTACGCAACAGTGGCAGAGCCTTTGTGTGAGTACAACTATGTTAAGTCTGGCCTCGGCTACTGCGATATTGCTGAGGGCTTCGGTGACGAAGCTCCACTGGGTGAGCTTATCAATGTTCACTATACTGCGAGATTCGCTGATGGGATAGTATTCGATAGCAGCTATAAACGTGCTAGACCTCTCACCATGCGCATTGGTGTGGGCAAGGTAATCAAGGGACTGGATCAGGGGATTTTAGGGGGTGAAGGAGTACCTCCAATGCGGATAGGTGGGAAACGCAAACTGCAGATTCCTCCGCACTTAGCATATGGCCCTGAACCTGCAGGGTGCTTCTCAGGTGACTGCAATATACCCGCCAATGCCACTCTTCTGTATGATATTAATTTTGTTGAGGTTTATTCGGGGAACAGATCAAAGTGA

Predicted protein sequences of Glyma08g14740

Limit To All Plant Sequences

>Glyma08g14740.1   sequence type=predicted peptide   gene model=Glyma08g14740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSVSSPSCVRVPSCFWKPNGKSCKERTKVSCAAHNDNKNPLVGIGIGVVTSCVMGLTALDADATRIEYYATVAEPLCEYNYVKSGLGYCDIAEGFGDEAPLGELINVHYTARFADGIVFDSSYKRARPLTMRIGVGKVIKGLDQGILGGEGVPPMRIGGKRKLQIPPHLAYGPEPAGCFSGDCNIPANATLLYDINFVEVYSGNRSK*

>Glyma08g14740.2   sequence type=predicted peptide   gene model=Glyma08g14740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSVSSPSCVRVPSCFWKPNGKSCKERTKVSCAAHNDNKNPLVGIGIGVVTSCVMGLTALDADATRIEYYATVAEPLCEYNYVKSGLGYCDIAEGFGDEAPLGELINVHYTARFADGIVFDSSYKRARPLTMRIGVGKVIKGLDQGILGGEGVPPMRIGGKRKLQIPPHLAYGPEPAGCFSGDCNIPANATLLYDINFVEVYSGNRSK*

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