Glyma08g14620 - SoyBase

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Report for Sequence Feature Glyma08g14620

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10654527
stop:	10659595
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g14620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39790	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF630 and DUF632) \| chr4:18462316-18464584 REVERSE LENGTH=657	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR21450	Panther	UNCHARACTERIZED	JGI		ISS
PF04782	PFAM	Protein of unknown function (DUF632)	JGI		ISS
PF04783	PFAM	Protein of unknown function (DUF630)	JGI		ISS
UniRef100_G7LAC7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP133 n=1 Tax=Medicago truncatula RepID=G7LAC7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338734	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338734 related cluster n=1 Tax=unknown RepID=UPI0002338734	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g14620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g14620

Paralog	Evidence	Comments
Glyma05g31400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g14620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g137900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g14620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g14620

Limit To All Plant Sequences

>Glyma08g14620.3   sequence type=transcript   gene model=Glyma08g14620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTTAATTTTAGAAATTAATTATAATTTAATGTACTTACAATTGTTTTTCAATGCAACGACTGAAAAAGTAAAAAAAACCGAAGCCAACACACAAAACGAGGTTCACCAGTGAAGTAAGTAAGTCGTTCACGTTTTTTGTTTGTTTCTCTTTCTGCACCTTTTTGCCATCTCTGCACAACGCTCATTGCTCTTTGCAGAATCTCTGCAACAAGGTTATTCCATTCACACTCAAAAAAACCAGAACAACACTGATACGCTTCAGGCTTCCCTTGATGGCTTTGTTTTGATGACCTTCACCTACCCTCATTGCTTCTCCTTTCCTTCTTTCTTTCTTTTGTTCTGATTGAAACCCACTCAATAACTTTTCAACCACCAATTGTCTTCCTTTTCCTTACAAAGGGTCCTGTCCCTTTCCTACTAACCTAAGTCCTAAGGTCTCTCATTTTTCTCATTTGCTGCATCACCATGCAACTTGGGGTGCTCACTATTACTCTGTTCGCCACTGTCTGAAACATAATTAAGGTTCCATTTTGACCAAGGAGGTCTTGCTTTTCCAGCTGTCAACTTTAAGGGTTGTGATATTTTAGTTTTCATCTTCATTGGGTTTGTTTTGCTTTTTTTTTTTTCTTTTCCAAGTGGGCCTCTTGGAATGTTGTGTGTGATCGTGAATGTGAATGTGTGAAGCTCTGAAGAAAAAGTAATGGGGTGGTGTGGGGGTTGATCAAAATAGAGTCTTTTCTATGAATGCTTGGTGAACTGATAAAAAGGGCAGAAATGGGTGCTACGAACTCAAGAGCGGAAAAGAATGAAGCTCTAAGTTTGTGCAAGGAAAGAAAGAGGTTCGTCAAGGTGGCTATTGACTCAAGATATGCTTTAGCAGCTGCACATGTTTCCTACATTCAATCTCTTCGAAACGTTGGCATTGCTCTCCGGAGGTATGCTGAGTCTGAGGTAGAGGTAGAGTCATCTCTGTCTATATCTGACAAAACTCCTTCTCAAACTAGTTACCCTTCTCCATCATCACCTTCTCATGTTGCTGAGGTTGAGGTTTTGGAGTCACCTTTGCACAATGAGAGTCCTCTTTCGCCACCTGTGGCCACCACTCTTAGTTACATGAGGTCAGGTGGTAGTGCTGCTGTCACTGTTAGGATCAATGCCTTTGGTAACAACTATTTGGATGATGAGTCCACTGTGGTTCCAATGCCTCCACCTCCTCCTGAGTCAGGTGCATCTTGGGATTTCTTTGACCCTGGGGAGGACAGTGAGAGCTTTAGGTTTGCAGTGCATTGTAGTGAGTCCAGAGACTTCAGGGATGAAGAAAAGGGTGATCAATGGTTACATGTTGGTTCTGATGGGCATTGCATGGTGCAACCACTCCTGGATGACAAGTTTGGTGGAAACTTGAGCAATGCTGGAATGGGAAATGAGTGTGGCAACTCTTATGCACACTGCAATGATCATTCTACTGTTTCAAGAGGAGTTGAAGGTGGAAATGGAATTGTTGATGGAGAATTGCGAGAGCTGGAGTTGCCAAGTGCTGCAGGTGGTTTGAGCCGGGCTGTCGCAGACAAAGATGCTGGTGGAAGGTCCAGTGCAAAGAGGGAGAAGAATATGCCAGGAAAAAATGTGTGCACAGAAAGAGAGGATCCTTCAGAGTTCATAACACACAGAGCTAAAGATTTTCTCTCCAGCATAAAGGATATAGAGCATAGGTTCGTTCGAGCTTCTGAGTCTGGTAGGGAGGTCTTGAGGTTGTTAGAGGCAAACAAAATAAAGGTTGGATATTCGGAGGCAAAAGGGAAGTCATCTACCACGGCGTTGTTGTCTGCCGTCCAGCCTGTTTGTTGCGGTAGAAAGGCTTCACCTGTTTTCCAGGAGCCTGCCCAAAAAATTATTAGTTGGAAAAGGACAGCATCTTCTCGATCATCCTCATCCAGGAATGCTTTGGCTACAAAAACAAAGGAAGATATTGATGATAGTGGAAGTGACTTTGTTGAAGAATTCTGTATGATTGCTGGAAGCCATTCATCCACTCTTGACAGACTATATGCCTGGGAGCGAAAACTATATGATGAAGTAAAGGCTAGTGAATCCATAAGGAAGGACTATGACCGAAAATGTCACCAGCTTAGGCATCAATTTGCTAAAGATCAAGGCACTCATGTGATTGACAAGACCCGGTCAGTTGTGAAGGATCTGCATTCACGCTTAACAGTGGCTATATATTCTGTTGATTCAATATCGAAACGAATTGAGAGAATGAGGGATGAAGAGTTGTTGCCACAACTTTTGGAGTTAACAGAAGGGCAAATTGATCAGGATGTGGAAGGCTATGCTTGAATGTCATCATGCACAATACATCACCATCTCTTTGGCATATCATTCAAGGAGCACACCAGGAACCTTGCAAGGATATGCACGCAGAGACATAATGACTCAGCTGCTAGAAGAAGTTGAGTTCTTTGGTCTGAGTTTTGCTAACTGGATTAACAGCCTCACCTCATATGTGGAAGCTGTCAATGCGTGGCTGCAAAACTGTATACTGCAACCAAGGGAGCGTACCAAGAGCAGAAGACCGTTCTCTCCTCGCCGAGTTCTGGCCCCACCTATTTTTGTTCTTTGCCGTGACTGGTCTGCTGGGATCAAGGTTTTACCCTCTGAGGAACTAAGTCAGACAATCAGAAACTTTTTGTCTGATCTTCACTTGCGGACAGAGCAGCATAATGACCAACTTCTCAAGAAACAGAATTCTGTCAATGCAAGTACTACTGAAACCGAGAGCAAACCTAACGAAGAGAATGAAGACGAGTCCACGAATTTGAGCTGCATACATGCAAGATTAACAAAGGTTCTTGATCGGCTGACCAAATTTTCTGAGGCATCATTGAAGATGTATGAAGATATCCGGCAAAAAAGTGAATCAGCTCGAAATGCATACCATAATTGCAGAACTATCAGGGCCGAAAAATTTTAATTCTTCAAGTATATAAATTTTTTTTTCTGCTGTGCTAGCTTGACATTAATTTTTATATATGAAAAAAACACCAAAAAAAAAAAACTTTAAACACATGAATGTTCATGGTCCTTGTTGGAGAAAGAAAATCGTGAGATGAAAAATGGGGTGTAAGTGTCTGTAAATGAGCTTTCAGTACATGTTATGATGACTAGCAAAGACTATGTTGCTTTGCTTTGTTAGTAGAATCTGAGATACTTACTTCACTGGTGGTTTGTGGTAGACACTGTTTTTGTACGTGGGCCATTGAAACAGTATCCGTTGGCATAACAGCAGCAAAGGCTAC

Coding sequences of Glyma08g14620

Limit To All Plant Sequences

>Glyma08g14620.2   sequence type=CDS   gene model=Glyma08g14620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGGTGAACTGATAAAAAGGGCAGAAATGGGTGCTACGAACTCAAGAGCGGAAAAGAATGAAGCTCTAAGTTTGTGCAAGGAAAGAAAGAGGTTCGTCAAGGTGGCTATTGACTCAAGATATGCTTTAGCAGCTGCACATGTTTCCTACATTCAATCTCTTCGAAACGTTGGCATTGCTCTCCGGAGGTATGCTGAGTCTGAGGTAGAGGTAGAGTCATCTCTGTCTATATCTGACAAAACTCCTTCTCAAACTAGTTACCCTTCTCCATCATCACCTTCTCATGTTGCTGAGGTTGAGGTTTTGGAGTCACCTTTGCACAATGAGAGTCCTCTTTCGCCACCTGTGGCCACCACTCTTAGTTACATGAGGTCAGGTGGTAGTGCTGCTGTCACTGTTAGGATCAATGCCTTTGGTAACAACTATTTGGATGATGAGTCCACTGTGGTTCCAATGCCTCCACCTCCTCCTGAGTCAGGTGCATCTTGGGATTTCTTTGACCCTGGGGAGGACAGTGAGAGCTTTAGGTTTGCAGTGCATTGTAGTGAGTCCAGAGACTTCAGGGATGAAGAAAAGGGTGATCAATGGTTACATGTTGGTTCTGATGGGCATTGCATGGTGCAACCACTCCTGGATGACAAGTTTGGTGGAAACTTGAGCAATGCTGGAATGGGAAATGAGTGTGGCAACTCTTATGCACACTGCAATGATCATTCTACTGTTTCAAGAGGAGTTGAAGGTGGAAATGGAATTGTTGATGGAGAATTGCGAGAGCTGGAGTTGCCAAGTGCTGCAGGTGGTTTGAGCCGGGCTGTCGCAGACAAAGATGCTGGTGGAAGGTCCAGTGCAAAGAGGGAGAAGAATATGCCAGGAAAAAATGTGTGCACAGAAAGAGAGGATCCTTCAGAGTTCATAACACACAGAGCTAAAGATTTTCTCTCCAGCATAAAGGATATAGAGCATAGGTTCGTTCGAGCTTCTGAGTCTGGTAGGGAGGTCTTGAGGTTGTTAGAGGCAAACAAAATAAAGGTTGGATATTCGGAGGCAAAAGGGAAGTCATCTACCACGGCGTTGTTGTCTGCCGTCCAGCCTGTTTGTTGCGGTAGAAAGGCTTCACCTGTTTTCCAGGAGCCTGCCCAAAAAATTATTAGTTGGAAAAGGACAGCATCTTCTCGATCATCCTCATCCAGGAATGCTTTGGCTACAAAAACAAAGGAAGATATTGATGATAGTGGAAGTGACTTTGTTGAAGAATTCTGTATGATTGCTGGAAGCCATTCATCCACTCTTGACAGACTATATGCCTGGGAGCGAAAACTATATGATGAAGTAAAGGCTAGTGAATCCATAAGGAAGGACTATGACCGAAAATGTCACCAGCTTAGGCATCAATTTGCTAAAGATCAAGGCACTCATGTGATTGACAAGACCCGGTCAGTTGTGAAGGATCTGCATTCACGCTTAACAGTGGCTATATATTCTGTTGATTCAATATCGAAACGAATTGAGAGAATGAGGGATGAAGAGTTGTTGCCACAACTTTTGGAGTTAACAGAAGGATTGATCAGGATGTGGAAGGCTATGCTTGAATGTCATCATGCACAATACATCACCATCTCTTTGGCATATCATTCAAGGAGCACACCAGGAACCTTGCAAGGATATGCACGCAGAGACATAATGACTCAGCTGCTAGAAGAAGTTGAGTTCTTTGGTCTGAGTTTTGCTAACTGGATTAACAGCCTCACCTCATATGTGGAAGCTGTCAATGCGTGGCTGCAAAACTGTATACTGCAACCAAGGGAGCGTACCAAGAGCAGAAGACCGTTCTCTCCTCGCCGAGTTCTGGCCCCACCTATTTTTGTTCTTTGCCGTGACTGGTCTGCTGGGATCAAGGTTTTACCCTCTGAGGAACTAAGTCAGACAATCAGAAACTTTTTGTCTGATCTTCACTTGCGGACAGAGCAGCATAATGACCAACTTCTCAAGAAACAGAATTCTGTCAATGCAAGTACTACTGAAACCGAGAGCAAACCTAACGAAGAGAATGAAGACGAGTCCACGAATTTGAGCTGCATACATGCAAGATTAACAAAGGTTCTTGATCGGCTGACCAAATTTTCTGAGGCATCATTGAAGATGTATGAAGATATCCGGCAAAAAAGTGAATCAGCTCGAAATGCATACCATAATTGCAGAACTATCAGGGCCGAAAAATTTTAA

>Glyma08g14620.3   sequence type=CDS   gene model=Glyma08g14620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGGTGAACTGATAAAAAGGGCAGAAATGGGTGCTACGAACTCAAGAGCGGAAAAGAATGAAGCTCTAAGTTTGTGCAAGGAAAGAAAGAGGTTCGTCAAGGTGGCTATTGACTCAAGATATGCTTTAGCAGCTGCACATGTTTCCTACATTCAATCTCTTCGAAACGTTGGCATTGCTCTCCGGAGGTATGCTGAGTCTGAGGTAGAGGTAGAGTCATCTCTGTCTATATCTGACAAAACTCCTTCTCAAACTAGTTACCCTTCTCCATCATCACCTTCTCATGTTGCTGAGGTTGAGGTTTTGGAGTCACCTTTGCACAATGAGAGTCCTCTTTCGCCACCTGTGGCCACCACTCTTAGTTACATGAGGTCAGGTGGTAGTGCTGCTGTCACTGTTAGGATCAATGCCTTTGGTAACAACTATTTGGATGATGAGTCCACTGTGGTTCCAATGCCTCCACCTCCTCCTGAGTCAGGTGCATCTTGGGATTTCTTTGACCCTGGGGAGGACAGTGAGAGCTTTAGGTTTGCAGTGCATTGTAGTGAGTCCAGAGACTTCAGGGATGAAGAAAAGGGTGATCAATGGTTACATGTTGGTTCTGATGGGCATTGCATGGTGCAACCACTCCTGGATGACAAGTTTGGTGGAAACTTGAGCAATGCTGGAATGGGAAATGAGTGTGGCAACTCTTATGCACACTGCAATGATCATTCTACTGTTTCAAGAGGAGTTGAAGGTGGAAATGGAATTGTTGATGGAGAATTGCGAGAGCTGGAGTTGCCAAGTGCTGCAGGTGGTTTGAGCCGGGCTGTCGCAGACAAAGATGCTGGTGGAAGGTCCAGTGCAAAGAGGGAGAAGAATATGCCAGGAAAAAATGTGTGCACAGAAAGAGAGGATCCTTCAGAGTTCATAACACACAGAGCTAAAGATTTTCTCTCCAGCATAAAGGATATAGAGCATAGGTTCGTTCGAGCTTCTGAGTCTGGTAGGGAGGTCTTGAGGTTGTTAGAGGCAAACAAAATAAAGGTTGGATATTCGGAGGCAAAAGGGAAGTCATCTACCACGGCGTTGTTGTCTGCCGTCCAGCCTGTTTGTTGCGGTAGAAAGGCTTCACCTGTTTTCCAGGAGCCTGCCCAAAAAATTATTAGTTGGAAAAGGACAGCATCTTCTCGATCATCCTCATCCAGGAATGCTTTGGCTACAAAAACAAAGGAAGATATTGATGATAGTGGAAGTGACTTTGTTGAAGAATTCTGTATGATTGCTGGAAGCCATTCATCCACTCTTGACAGACTATATGCCTGGGAGCGAAAACTATATGATGAAGTAAAGGCTAGTGAATCCATAAGGAAGGACTATGACCGAAAATGTCACCAGCTTAGGCATCAATTTGCTAAAGATCAAGGCACTCATGTGATTGACAAGACCCGGTCAGTTGTGAAGGATCTGCATTCACGCTTAACAGTGGCTATATATTCTGTTGATTCAATATCGAAACGAATTGAGAGAATGAGGGATGAAGAGTTGTTGCCACAACTTTTGGAGTTAACAGAAGGGCAAATTGATCAGGATGTGGAAGGCTATGCTTGA

Predicted protein sequences of Glyma08g14620

Limit To All Plant Sequences

>Glyma08g14620.2   sequence type=predicted peptide   gene model=Glyma08g14620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGELIKRAEMGATNSRAEKNEALSLCKERKRFVKVAIDSRYALAAAHVSYIQSLRNVGIALRRYAESEVEVESSLSISDKTPSQTSYPSPSSPSHVAEVEVLESPLHNESPLSPPVATTLSYMRSGGSAAVTVRINAFGNNYLDDESTVVPMPPPPPESGASWDFFDPGEDSESFRFAVHCSESRDFRDEEKGDQWLHVGSDGHCMVQPLLDDKFGGNLSNAGMGNECGNSYAHCNDHSTVSRGVEGGNGIVDGELRELELPSAAGGLSRAVADKDAGGRSSAKREKNMPGKNVCTEREDPSEFITHRAKDFLSSIKDIEHRFVRASESGREVLRLLEANKIKVGYSEAKGKSSTTALLSAVQPVCCGRKASPVFQEPAQKIISWKRTASSRSSSSRNALATKTKEDIDDSGSDFVEEFCMIAGSHSSTLDRLYAWERKLYDEVKASESIRKDYDRKCHQLRHQFAKDQGTHVIDKTRSVVKDLHSRLTVAIYSVDSISKRIERMRDEELLPQLLELTEGLIRMWKAMLECHHAQYITISLAYHSRSTPGTLQGYARRDIMTQLLEEVEFFGLSFANWINSLTSYVEAVNAWLQNCILQPRERTKSRRPFSPRRVLAPPIFVLCRDWSAGIKVLPSEELSQTIRNFLSDLHLRTEQHNDQLLKKQNSVNASTTETESKPNEENEDESTNLSCIHARLTKVLDRLTKFSEASLKMYEDIRQKSESARNAYHNCRTIRAEKF*

>Glyma08g14620.3   sequence type=predicted peptide   gene model=Glyma08g14620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGELIKRAEMGATNSRAEKNEALSLCKERKRFVKVAIDSRYALAAAHVSYIQSLRNVGIALRRYAESEVEVESSLSISDKTPSQTSYPSPSSPSHVAEVEVLESPLHNESPLSPPVATTLSYMRSGGSAAVTVRINAFGNNYLDDESTVVPMPPPPPESGASWDFFDPGEDSESFRFAVHCSESRDFRDEEKGDQWLHVGSDGHCMVQPLLDDKFGGNLSNAGMGNECGNSYAHCNDHSTVSRGVEGGNGIVDGELRELELPSAAGGLSRAVADKDAGGRSSAKREKNMPGKNVCTEREDPSEFITHRAKDFLSSIKDIEHRFVRASESGREVLRLLEANKIKVGYSEAKGKSSTTALLSAVQPVCCGRKASPVFQEPAQKIISWKRTASSRSSSSRNALATKTKEDIDDSGSDFVEEFCMIAGSHSSTLDRLYAWERKLYDEVKASESIRKDYDRKCHQLRHQFAKDQGTHVIDKTRSVVKDLHSRLTVAIYSVDSISKRIERMRDEELLPQLLELTEGQIDQDVEGYA*

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