Glyma08g14581 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g14581

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10582759
stop:	10585343
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g14581

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65170	AT	Annotation by Michelle Graham. TAIR10: VQ motif-containing protein \| chr5:26041218-26042306 FORWARD LENGTH=362	SoyBase	E_val: 1.00E-20	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05678	PFAM	VQ motif	JGI		ISS
UniRef100_I1K4K4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4K4_SOYBN	SoyBase	E_val: 2.00E-118	ISS
UniRef100_Q6AVF5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q6AVF5_ORYSJ	SoyBase	E_val: 3.00E-08	ISS

Proteins Associated with Glyma08g14581

Locus	Gene Symbol	Protein Name
	VQ34	VQ motif containing protein gene 34

Expression Patterns of Glyma08g14581

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g14581 not represented in the dataset	Glyma08g14581 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g14581

Paralog	Evidence	Comments
Glyma05g31341	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g14581 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g137300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g14581

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g14581

Limit To All Plant Sequences

>Glyma08g14581.1   sequence type=CDS   gene model=Glyma08g14581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCGGCAAACACCAGCGGGAGCTTGCAATCCTCAAGCGGCGCTGATGAAGAGTACGATTCACGCGCAGAATCATCACCACTCTCTATGTTCTTAACCAACCAACCTCAACCACAACCACCACCAAGCCAAGTTGCTCCCTTTATTCCACCACCACATCAACAACTACAACACCACCAAAACACCCACATGTTCGACCCTTTATCAAACTACTTGGATCCGATCCCACAAAGTTCAGCATCACTGTTAAACCTTGACGTGATGTGGTCGAAACAAGTGAGATCCGAACCAAACCAAACGGATCTTGTTAGCTTGATACCTCATAACCAAGCTTTTGTGTCAAGTCAAACACGAGGGAACAATAGTGGTGCTTTTCCTACTTTGCCTCCAGAGAGTGGTTCCCGAGGACTAATGCTTTCAGTGTCAGCCGCAAACAATGATCAAATTCAAACCCACACCAACAACAGCAGCAGCAACATGGTTCGAAACCCGAAGAAACGGTCAAGAGCTTCTAGGCGTGCACCTACCACTGTGCTAACCACAGACACCACCAATTTCCGAGCCATGGTTCAGGAATTTACTGGCATCCCAGCACAACCCTTCACATCCTCGTCTTTCCCGAGAACCAGGTTGGATCTCTTTGCTTCCGCCGCAACACCAACTTTGATGAGATCCAACGTTAACGTTAACCCTTTGGACCCTCCAACACAACCTCCTTATCTTCTTCGCCCCTTTGCACAAAAACTCCAACTTCGAAGTCTTCACCCGTTTCCCCCCTCCTTTTCCAATACCTTCTTACCTCCTTCAACAAACTCTTCCACTAATTCAACTTCCATTAATTACCAACAACAACAACAACAACTATCTGAACATTTCGGCTTTGTGAAACAGCCTCTCAACTTTAACAACACAACCCCAGACAATAGTACTCTCGAAGCATATCATCAGCTCAAGCACCATCTTGGCAACTCTTCTTCTGTTCTCGTCTCCAGAACACAACAACACCACTCCTTGGAAATTCCGCCGAATCTCAAAAATGGTGTGTTTGAAGAACTGGGACTGAGACACGACCATGTTAACACCGACCTCGGATGTCTTCATCAGAGCATGGTTTCGTCAACATCAGTTGGAGTGGGAGCATTGTCAAGTGGAAACAACAACAACAATAACTTGAGTAATGCTACTAATTCTTCAACGGAATGGGCCCAGAGAACGGGCACCATTACCAACAATGATTGCGATCACGGAGGAGGAGGAGCTCTCAGTGGCACTATCAACTACAGTGACACTAATGGCAAAGTACACTACTCAGCTTCTTCATCGGATTTTCATGGAGAGAAGGGGCCAGACTTCACTGTAACTGCAACCAGAACTCAAGGAATGGTGGAGTCCTGGATTAATTGTTCTTCTGATTAA

Predicted protein sequences of Glyma08g14581

Limit To All Plant Sequences

>Glyma08g14581.1   sequence type=predicted peptide   gene model=Glyma08g14581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSANTSGSLQSSSGADEEYDSRAESSPLSMFLTNQPQPQPPPSQVAPFIPPPHQQLQHHQNTHMFDPLSNYLDPIPQSSASLLNLDVMWSKQVRSEPNQTDLVSLIPHNQAFVSSQTRGNNSGAFPTLPPESGSRGLMLSVSAANNDQIQTHTNNSSSNMVRNPKKRSRASRRAPTTVLTTDTTNFRAMVQEFTGIPAQPFTSSSFPRTRLDLFASAATPTLMRSNVNVNPLDPPTQPPYLLRPFAQKLQLRSLHPFPPSFSNTFLPPSTNSSTNSTSINYQQQQQQLSEHFGFVKQPLNFNNTTPDNSTLEAYHQLKHHLGNSSSVLVSRTQQHHSLEIPPNLKNGVFEELGLRHDHVNTDLGCLHQSMVSSTSVGVGALSSGNNNNNNLSNATNSSTEWAQRTGTITNNDCDHGGGGALSGTINYSDTNGKVHYSASSSDFHGEKGPDFTVTATRTQGMVESWINCSSD*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain