Report for Sequence Feature Glyma08g14570
Feature Type: gene_model
Chromosome: Gm08
Start: 10566307
stop: 10569686
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g14570
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G39740 AT
Annotation by Michelle Graham. TAIR10: Thioredoxin superfamily protein | chr4:18435586-18437095 REVERSE LENGTH=276
SoyBase E_val: 8.00E-114 ISS
GO:0055070 GO-bp
Annotation by Michelle Graham. GO Biological Process: copper ion homeostasis
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2792
KOG
Putative cytochrome C oxidase assembly protein
JGI ISS
PTHR12151 Panther
SCO1/SENC
JGI ISS
PF02630 PFAM
SCO1/SenC
JGI ISS
UniRef100_I1KT38 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KT38_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q8LAL0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein SCO1 homolog 2, mitochondrial n=1 Tax=Arabidopsis thaliana RepID=SCO12_ARATH
SoyBase E_val: 4.00E-111 ISS
Expression Patterns of Glyma08g14570
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g14570
Paralog Evidence Comments
Glyma05g31330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g14570 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g137200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g14570
Coding sequences of Glyma08g14570
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g14570.1 sequence type=CDS gene model=Glyma08g14570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCTATTCCTAGGTTTATGCTCTTTTCATCCCAGCATCGCTCCACTGCTGCGGCCCTCGCTCTTCTTCGAAGGTGCGTTCCCTCTACGACAACTCAATCTGTTAGGTATTCAAAATCAACAAGTCACGGTAAAACAAAACATTATCTTCATCCTGTATTCCAACCAGAATCCAGCTCCGCCTCCCAGGTTTCTCGCTCATGGGGTGCCTATGTTGTTCCAGCTGCTGTTCTTGGATTTGCTGGGCTTGCAGCTTTTTTTCACTATAATGATGAGAGAAGAGCGGTTCCCAAAGGTCATCAGGGTGGTGGCCTCAGAAATGTTGCCAATGGACCCATAATTGGGGGTCCATTTACACTAATTAATACAGAGAAACAAGCAATTACAGAACGTAATTTTCTTGGGAATTGGGTCCTCCTCTACTTTGGTTATACCTCATCCCCCGATCTTGGGCCAGAGCAAGTCCAAATTATGGCCAACGCAATTGATATATTAGAATCAAAACAGAATCTCAAGATTCTACCAGTATTTGTTTCCATTGATCCTCAACGTGATACTCCCTCACAACTTCGTGCTTACCTTAAAGAGTTTGATTCAAGAATCATAGGATTAACTGGACCTGTTGCAGCTATTAGGCAGATGGCTCAAGAATATCGTGTTTACTTTAAAAAGGTAGAAGAGGATGGCAATGATTATCTTGTTGACTGTTCCCACAACATGTATTTGCTGAATCCTAAATTGGAGGTTACGAGATGCTTTGGAGTCGAGTATAGTGCAGAGGAGTTGTCAGAAGCGATAGTGAAAGAGCTGAACAGAAACCCCTCTTGA
Predicted protein sequences of Glyma08g14570
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g14570.1 sequence type=predicted peptide gene model=Glyma08g14570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPIPRFMLFSSQHRSTAAALALLRRCVPSTTTQSVRYSKSTSHGKTKHYLHPVFQPESSSASQVSRSWGAYVVPAAVLGFAGLAAFFHYNDERRAVPKGHQGGGLRNVANGPIIGGPFTLINTEKQAITERNFLGNWVLLYFGYTSSPDLGPEQVQIMANAIDILESKQNLKILPVFVSIDPQRDTPSQLRAYLKEFDSRIIGLTGPVAAIRQMAQEYRVYFKKVEEDGNDYLVDCSHNMYLLNPKLEVTRCFGVEYSAEELSEAIVKELNRNPS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
