Glyma08g14560 - SoyBase

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Report for Sequence Feature Glyma08g14560

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10562211
stop:	10564813
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g14560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65160	AT	Annotation by Michelle Graham. TAIR10: tetratricopeptide repeat (TPR)-containing protein \| chr5:26031457-26033668 REVERSE LENGTH=593	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
PTHR22904	Panther	CHAPERONE BINDING PROTEIN	JGI		ISS
PF00515	PFAM	Tetratricopeptide repeat	JGI		ISS
PF07719	PFAM	Tetratricopeptide repeat	JGI		ISS
UniRef100_G7J3U4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DnaJ homolog subfamily C member-like protein n=1 Tax=Medicago truncatula RepID=G7J3U4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338732	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338732 related cluster n=1 Tax=unknown RepID=UPI0002338732	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g14560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g14560

Paralog	Evidence	Comments
Glyma05g31320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g14560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g137100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g14560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g14560

Limit To All Plant Sequences

>Glyma08g14560.1   sequence type=CDS   gene model=Glyma08g14560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAACAACTTCCCACAGGGAAAATGTGGCTGTGGTGGCTTAATATTCTGGCGTCCTCCTCCCAACAACAACAATAACAACAGCAATGCCAACAAATTTGAGAATTTATCAAACGCCTCTGACACAAAAAAAGGTCAAGGTGGCTGTGAAGATATAACTTTCTCAGGAACAGCTTCATCTAATAAACCCACAAATTCTTCAACTCGTTCTGGCACCAAGCCAAACCATGTTGTTAACCAAAACTACCAAAGGAACCATCCCAAAGTGTCACCTACCGAGGGCTATGTCAGCAATGGAAGAAGGGTCCCTAAAGAAGCAATTGGCATTTCTGGTGAACTGGAAAGCATGATCACCGATCGCCAAAAGGGGAGCAGCAACCTTGTTCGTGCTTCTTCTAGCAACGTTATGATGTTTAATAATTTAGGTAACCTCAGGCAAGGAGGGAATACAAATACGTATTCTCAGAACCCTGTTGCCAATGGAAGATACACAAACCAAACGGTGGAGAATGTAAGTAAAGGAAACAAGGAACAACCGGGTTCTCTATGCAGGGTCGTGTCTACTAGAATGAACCCCGAACAATTAAAGATAATGGGCAATGAGGATTATAAGAATGGAAGATTTCAAGAAGCATTGGCTCTTTATGATGCTGCAATTGCAATTGACCCTAATAAAGCTTCCTATAGGAGCAACAAAAGTGCAGCATTAACGGCTCTTGGGAGGCTTCTGGAGGCTGTGTTTGAGTGCAGAGAAGCCATTCAAATTGAGCCTCGTTATCAAAGAGCTCATTACCGATTGGGAAACTTGAACATGAGATTAGGAGAAATGGATAAGGCTCTTTATCATTATAAACAAGCAGGACCAGAGATTGACCCAGACGAGAATGCTAAAGTCAAAAAAATTCAGGTCCATTTGAACAAATGCACCGAGGCACGTAGGCTAGGAGATTGGAACAAGTTGATTAAGGAGACCAATAATGCTATTTCATCTGGTGCAGATTCTGCTCCACAGATATTTGCGTTGCAAGCCGAGGCATTTTTGAAGCTCCGTAGGCACCAACATGCAGAAGAAGCAATGTCAAAGGGGTCTAATTTTGATGTTGATCATTGCACCAAGTTCTTTGGACCTATTTGCCATGCAAATACATTGGTGACTCAGTCCCGGGTTCATTTGGCTGCTGGCAGATTTGAAGATGCCCTAGTTGCAATTCAGAGAGCATCTAGGCTTGATCCAAATAATAATGAGATGAAGAAGGTGATGAGGAAGGCTAGAGCTGCGGCTGCAGCTCGATCAAACGGAAACGAGCTTTTCATGGCATCAAAATTCTCTGAAGCATCTGTTGCCTATGGAGAAGGGTTAGAGCATGATCCATATAACTCGGTTTTGCTATGCAACCGAGCTGCATGTAGATCCAAATTAGGCCAATTTGAGAAGGCTGTGGAAGATTGCAATGCTTCTCTTAGCTTGCGTCCATCTTACAGCAAGGCTAGGCTGAGAAGAGCAGATTGTAATGCCAAGTTGAAAAGATGGGAAGCTTCAATACAAGACTATGAAATATTGCTTAAAGAGACACCGGAGGATGAAGAATTAACAAGGGCTTTGTTGGAGGCCAAAGAGCATCTTATACAACAGCGAGGTGAATGA

Predicted protein sequences of Glyma08g14560

Limit To All Plant Sequences

>Glyma08g14560.1   sequence type=predicted peptide   gene model=Glyma08g14560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNNFPQGKCGCGGLIFWRPPPNNNNNNSNANKFENLSNASDTKKGQGGCEDITFSGTASSNKPTNSSTRSGTKPNHVVNQNYQRNHPKVSPTEGYVSNGRRVPKEAIGISGELESMITDRQKGSSNLVRASSSNVMMFNNLGNLRQGGNTNTYSQNPVANGRYTNQTVENVSKGNKEQPGSLCRVVSTRMNPEQLKIMGNEDYKNGRFQEALALYDAAIAIDPNKASYRSNKSAALTALGRLLEAVFECREAIQIEPRYQRAHYRLGNLNMRLGEMDKALYHYKQAGPEIDPDENAKVKKIQVHLNKCTEARRLGDWNKLIKETNNAISSGADSAPQIFALQAEAFLKLRRHQHAEEAMSKGSNFDVDHCTKFFGPICHANTLVTQSRVHLAAGRFEDALVAIQRASRLDPNNNEMKKVMRKARAAAAARSNGNELFMASKFSEASVAYGEGLEHDPYNSVLLCNRAACRSKLGQFEKAVEDCNASLSLRPSYSKARLRRADCNAKLKRWEASIQDYEILLKETPEDEELTRALLEAKEHLIQQRGE*

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