SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G27080 | AT | Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:11566383-11567165 FORWARD LENGTH=260 | SoyBase | E_val: 2.00E-36 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF03168 | PFAM | Late embryogenesis abundant protein | JGI | ISS | |
| UniRef100_G7K2X8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Avr9/Cf-9 rapidly elicited protein n=1 Tax=Medicago truncatula RepID=G7K2X8_MEDTR | SoyBase | E_val: 1.00E-30 | ISS |
| UniRef100_I1KT35 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KT35_SOYBN | SoyBase | E_val: 2.00E-149 | ISS |
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Glyma08g14540 not represented in the dataset |
Glyma08g14540 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g31300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g136900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g14540.2 sequence type=CDS gene model=Glyma08g14540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGGGCAGACGGTTGGGCGAAGGGGAGGCGGAGTAGGGCTGAGCGGGCGACGGCGCGCCGTAGCTGTAGCTGGGAGGCTGCCGCAGGCACGTACATCGTGCAGTTCCCGAAGGACCAAGTGTACCGCGTTCCACCACGCGAGAACGCGTTGATCGTGGAACAGTACCGCAACCCGGCCACCGCGAAAAAAAGACGCGGCGGTTGTTGTTGCTGTTGCAACCGTCGTGTCTTGATAACCTTCGCTCTCGTGGTTACCACAATCGTTGCCGTGGTTGGCATCACGTTGGCCACGTTGTACTTTATTTTCAGCCCCGCGGGTCCCAAGTTTACTGTCTCCCATGTGGCGGTGAATAGGAACAACAAGAACTCGCAGGGGGCGGCGGCGCAGTATGAGGTTTCGTTGAGAGCGAGGAATCCGAACGAGAAGTTGGCGATTCAGTACCAGGAAGGGGACGTGTCGCTGTTGTTGTTCGATGAGAGTAAGGTTGCCGAGGGGAAGTTTCCAACGTTGGAGCAAGGGGGAGGTGAGGCGAGTGAGGTTAAGCTTGAGCTGACCGGATCCAGTGGAGCGTTTCCCAGGGGAATGCATGGTGGGGACGCAGCCGTGGATTTGAAATTGGAGATCAAACTTGCGATAAGGATTAGGACCGCGGGTCTCGAAACGTGGGGTATGAGCTCCAATGTGGCGTGTCAGTTTAAGGTCAGTGGTCTCGGTAACGACACGAGAATCTTGTCACAACAATGTGATACCAAATTCAAGCAATATTGA
>Glyma08g14540.2 sequence type=predicted peptide gene model=Glyma08g14540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GADGWAKGRRSRAERATARRSCSWEAAAGTYIVQFPKDQVYRVPPRENALIVEQYRNPATAKKRRGGCCCCCNRRVLITFALVVTTIVAVVGITLATLYFIFSPAGPKFTVSHVAVNRNNKNSQGAAAQYEVSLRARNPNEKLAIQYQEGDVSLLLFDESKVAEGKFPTLEQGGGEASEVKLELTGSSGAFPRGMHGGDAAVDLKLEIKLAIRIRTAGLETWGMSSNVACQFKVSGLGNDTRILSQQCDTKFKQY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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