Glyma08g14510 - SoyBase

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Report for Sequence Feature Glyma08g14510

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10540851
stop:	10542733
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g14510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39840	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 20719 Blast hits to 6096 proteins in 607 species: Archae - 22; Bacteria - 3243; Metazoa - 4364; Fungi - 2270; Plants - 237; Viruses - 128; Other Eukaryotes - 10455 (source: NCBI BLink). \| chr4:18485268-18486623 FORWARD LENGTH=451	SoyBase	E_val: 6.00E-122	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KT32	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KT32_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g14510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g14510

Paralog	Evidence	Comments
Glyma05g31290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g14510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g136600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g14510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g14510

Limit To All Plant Sequences

>Glyma08g14510.1   sequence type=CDS   gene model=Glyma08g14510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAACTCAATCACAGAAAGCTACTACTCTTCTATGTTCTTTTATTCCTTTCTCTTTCTGTTTGCTTCGGTGCCAGCTCGTTGGAACCTCAACATAGTAGAAGAATGTTGGGTGCCCAAAAACAAGAGCAAGAGAAGCCTTTGAAAAACAAAACCACCGCCAAAAACCAAACCAAGCCAATCAAGCCCACTAATAGTATTTCCTCAACGAACCACACCAAAACCACAAAATCACCCCACAACATTTCCTCCAAAAACCAAACCAAGCCACTCAAGCCTAGCTCCACCAATTCAGCTTCCACCGACACTGCCCTCGCCAAGAAGCTCAATAGTAAGATCAAGAAGCTCAACGTCACATCCAAAACCTCACCCTCAAAACCCGGTACCAGCGTTTCCATTTCCAGCAACAAGAAAACATTGGATCTCGCCAAACCAACTAACAAAACAGCAAAAGACAACAAGCAACCCAGAACAGCAAAAGTAGATCAAACTCACGACGCAACAACAAACAAGAAACAAAAGACTCCCCCGAACCAACTACTACAACAAACGAAGAAGAAACCAGCTCCGAAACAAGCACCACCGAGTTGGATCGTGGAGGAGGATGAGGACGAATATGATTTGGTTTCAGAGTTGACAGATCTACCCAACAAGTTCCACCGAACACTCCTCCCCGACCTGGAACGAATCTCCACCACTTCCAAAGCCTACATCACCAAAGCCAACAGCGAAATTACCAAAGGCTTCAAACCCTACGTTGGCAAAAAATACGCACCCACCGTCGCCACCATTATCTCTAGCGCCTTCATACTCATCCCTCTCCTCTTAGTCTCTCTCCTCTGCACAAGAATCAAAGCCTATTTCTCCCTCCAGAAGATCCTAATCTTCATCCAAGTCTATCTCTCTTTCTACTTCACCATTCTCTGTGTCACTTCGTTCTTCACCGGCTTCGAACCCCTCAGGTTTCTATACTCTACTTCGCAGTCCACGTATCTGTGCCTGCAGGTGCTGCAGACTCTCGCTTACGTCTTCTACTTGCTGCTGCTTCTCATGTACCTCGTGCTCGTGTTCTCCACGGACTGTGGGCTGGGCTCCAAGTTCTTGGGCCTGGCCCAGGTCTTCGTGGGCTTTGCCGTTGGGCTGCATTACTACGTCACGGTGTTCCACAGGGTGGTGCTGCAGCAACCGCCCAAGACGAATTGGAAGATCCACGCGATTTACGCCACGTGTTTTCTGCTCATCTGTGTGCTTGCTAGAGCTGATAGAAGGAAAAAGAATTACGTGGAGGACGGTGGAGGAGAAGGCAAGAAAAATTGA

Predicted protein sequences of Glyma08g14510

Limit To All Plant Sequences

>Glyma08g14510.1   sequence type=predicted peptide   gene model=Glyma08g14510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQLNHRKLLLFYVLLFLSLSVCFGASSLEPQHSRRMLGAQKQEQEKPLKNKTTAKNQTKPIKPTNSISSTNHTKTTKSPHNISSKNQTKPLKPSSTNSASTDTALAKKLNSKIKKLNVTSKTSPSKPGTSVSISSNKKTLDLAKPTNKTAKDNKQPRTAKVDQTHDATTNKKQKTPPNQLLQQTKKKPAPKQAPPSWIVEEDEDEYDLVSELTDLPNKFHRTLLPDLERISTTSKAYITKANSEITKGFKPYVGKKYAPTVATIISSAFILIPLLLVSLLCTRIKAYFSLQKILIFIQVYLSFYFTILCVTSFFTGFEPLRFLYSTSQSTYLCLQVLQTLAYVFYLLLLLMYLVLVFSTDCGLGSKFLGLAQVFVGFAVGLHYYVTVFHRVVLQQPPKTNWKIHAIYATCFLLICVLARADRRKKNYVEDGGGEGKKN*

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