Glyma08g14460 - SoyBase

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Report for Sequence Feature Glyma08g14460

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10496547
stop:	10499876
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g14460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65020	AT	Annotation by Michelle Graham. TAIR10: annexin 2 \| chr5:25973915-25975554 FORWARD LENGTH=317	SoyBase	E_val: 9.00E-176	ISS
GO:0006084	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0015774	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide transport	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009986	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell surface	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0005544	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium-dependent phospholipid binding	SoyBase	N/A	ISS
KOG0819	KOG	Annexin	JGI		ISS
PTHR10502	Panther	ANNEXIN	JGI		ISS
PTHR10502:SF10	Panther	ANNEXIN VII	JGI		ISS
PF00191	PFAM	Annexin	JGI		ISS
UniRef100_C6TFT8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Annexin n=2 Tax=Glycine max RepID=C6TFT8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C6TFT8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Annexin n=2 Tax=Glycine max RepID=C6TFT8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g14460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g14460 not represented in the dataset	Glyma08g14460 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g14460

Paralog	Evidence	Comments
Glyma05g31250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g14460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g136200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g14460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g14460

Limit To All Plant Sequences

>Glyma08g14460.2   sequence type=transcript   gene model=Glyma08g14460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTTTGTGGTTGATGATAGGTTCGTATCATATCTTTGTATATAAATGGTTAAGCTGGCACCAACTCCTCACATTGCTCTGAATTTTCTGCATCATATTGCACACAGAGATCGTGATCGAAAATGGCGACGTTGAAGGTTCCTGCACAACTTCCTTCTCCATTGGAAGACAGTGAGCAATTGCGAAAAGCTTTTCAAGGGTGGGGAACGAATGAAGGATTGATAATATCAATCCTGGGTCACAGAAACGCGGCTCAGCGTAAGTTGATTCGTGAAGCTTATAGTACAACCCATGGAGAAGATCTTCTTAAAGATTTAGACAAAGAACTTTCAAGTGACTTTGAGCGGGCTGTGATGGTTTGGACATTGGATCCTTCTGAGCGTGATGCCTTTTTAGCAAATGAAGCCACTAAGATGTTGACTTCAAACAATTGGGTCATTTTGGAAATTGCTTCCACTAGATCTTCACTTGACCTCCTAAAGGCAAAACAAGCATATCAAGCCCGTTTCAAAAAGTCCCTTGAAGAAGACGTTGCCTATCATACTAAAGGGGACATCCGCAAGCTATTGGTTCCTCTTGTGAGCACATTCCGTTATGAGGGGGATGAGGTGAACATGACATTGGCAAAATCTGAGGCTAAACTGCTTCACCAGAAGATTGCAGAGAAGGCCTACAACGACGAGGACCTGATCAGGATTTTGTCAACAAGGAGTAAAGCACAGTTAACAGCGACACTAAATCAGTACAACAATGAGTTCGGGAATGCCATAAACAAGGATCTGAAAACTGATCCAAAAGATGAATATCTGCAATTATTGAGGGCAGCCATTAAGTGCTTGACTTACCCTGAGAAATATTTTGCAAAAGTCTTGAGGCTGGCTATAAACAAGCTAGGAACTGATGAAGGGGCCCTTACTAGAGTGGTGACAACCAGAGCTGAGGTTGATTTGCAGCGAATTGCTGAGGAATACCAAAGAAGAAACAGCATTCCTCTGGACCGCGCAATAGCCAGTGACACTTCTGGAGACTATCAGAGCATTCTCCTTGCACTGGTTGGACATGAGGATTAAGTTTTCTTTCTTAATCTGTTCAGTTGTCATGGGATTGCTTGTTAGGCTATTTGCTTTTCCTCTTATCATGAATGTGATATTGCTATGGATCTCTGGACAGAGGAATTCAGTGGCTTGCTGTTAACGCTGCTTATGAGGGGTATAAATTATCATGCTGTTTCAGAATAATATGTTTTGAATGTCGAAAATTCAAGACATAGCACTTCACATCTTTATTAAGGATCAATTATATGTTTTAGAATAATAAAATATTTGCTGCGTCTTTTACTACTGTTATTAAGGATCAATTATTCCTACCACCATATCATGACACTTCACATAAAGACGTTCTAGATACAATAAAGGCAACTATAATTGTCTACTTCTCAACAATATATCAGCAAATATACTTCTCAACAATTATCTCATAAAAAGCATAAACCAGATTTCATATTTGCTGATTTTTGAAGATTATCAATGTTCTGTAATAGAGCAAGATTAAGTTTCTTATGTATAGAGAAGCTTACGTGTTGCATTTGTTTTAGCATCTTGATATAGGCCTTGTATTAGGGAGACTTTTGATTTTCTCTAGATGTGGGGTATGCCCCGTTTATTATTGTATCATTTTGGATTTAATATAATTTTCATTTTTTCC

>Glyma08g14460.3   sequence type=transcript   gene model=Glyma08g14460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTTTGTGGTTGATGATAGGTTCGTATCATATCTTTGTATATAAATGGTTAAGCTGGCACCAACTCCTCACATTGCTCTGAATTTTCTGCATCATATTGCACACAGAGATCGTGATCGAAAATGGCGACGTTGAAGGTTCCTGCACAACTTCCTTCTCCATTGGAAGACAGTGAGCAATTGCGAAAAGCTTTTCAAGGGTGGGGAACGAATGAAGGATTGATAATATCAATCCTGGGTCACAGAAACGCGGCTCAGCGTAAGTTGATTCGTGAAGCTTATAGTACAACCCATGGAGAAGATCTTCTTAAAGATTTAGACAAAGAACTTTCAAGTGACTTTGAGGTCAGTTTAAATCTTTTGATATTTGGCTTATTTATGTAAATCTCACGCTTTTTTCATTTGTCAGAAATTTATCAATTTTCATAGTATCAATCTCAGTGTTCTATATGGATAATATTAATTGAAGGAAATGGATAATTACAGTTATGAAGTTAGTATATTGTCTAATGTTTAATGTTTTGAATATAAAAGCGGGCTGTGATGGTTTGGACATTGGATCCTTCTGAGCGTGATGCCTTTTTAGCAAATGAAGCCACTAAGATGTTGACTTCAAACAATTGGGTCATTTTGGAAATTGCTTCCACTAGATCTTCACTTGACCTCCTAAAGGCAAAACAAGCATATCAAGCCCGTTTCAAAAAGTCCCTTGAAGAAGACGTTGCCTATCATACTAAAGGGGACATCCGCAAGCTATTGGTTCCTCTTGTGAGCACATTCCGTTATGAGGGGGATGAGGTGAACATGACATTGGCAAAATCTGAGGCTAAACTGCTTCACCAGAAGATTGCAGAGAAGGCCTACAACGACGAGGACCTGATCAGGATTTTGTCAACAAGGAGTAAAGCACAGTTAACAGCGACACTAAATCAGTACAACAATGAGTTCGGGAATGCCATAAACAAGGATCTGAAAACTGATCCAAAAGATGAATATCTGCAATTATTGAGGGCAGCCATTAAGTGCTTGACTTACCCTGAGAAATATTTTGCAAAAGTCTTGAGGCTGGCTATAAACAAGCTAGGAACTGATGAAGGGGCCCTTACTAGAGTGGTGACAACCAGAGCTGAGGTTGATTTGCAGCGAATTGCTGAGGAATACCAAAGAAGAAACAGCATTCCTCTGGACCGCGCAATAGCCAGTGACACTTCTGGAGACTATCAGAGCATTCTCCTTGCACTGGTTGGACATGAGGATTAAGTTTTCTTTCTTAATCTGTTCAGTTGTCATGGGATTGCTTGTTAGGCTATTTGCTTTTCCTCTTATCATGAATGTGATATTGCTATGGATCTCTGGACAGAGGAATTCAGTGGCTTGCTGTTAACGCTGCTTATGAGGGGTATAAATTATCATGCTGTTTCAGAATAATATGTTTTGAATGTCGAAAATTCAAGACATAGCACTTCACATCTTTATTAAGGATCAATTATATGTTTTAGAATAATAAAATATTTGCTGCGTCTTTTACTACTGTTATTAAGGATCAATTATTCCTACCACCATATCATGACACTTCACATAAAGACGTTCTAGATACAATAAAGGCAACTATAATTGTCTACTTCTCAACAATATATCAGCAAATATACTTCTCAACAATTATCTCATAAAAAGCATAAACCAGATTTCATATTTGCTGATTTTTGAAGATTATCAATGTTCTGTAATAGAGCAAGATTAAGTTTCTTATGTATAGAGAAGCTTACGTGTTGCATTTGTTTTAGCATCTTGATATAGGCCTTGTATTAGGGAGACTTTTGATTTTCTCTAGATGTGGGGTATGCCCCGTTTATTATTGTATCATTTTGGATTTAATATAATTTTCATTTTTTCC

Coding sequences of Glyma08g14460

Limit To All Plant Sequences

>Glyma08g14460.1   sequence type=CDS   gene model=Glyma08g14460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACGTTGAAGGTTCCTGCACAACTTCCTTCTCCATTGGAAGACAGTGAGCAATTGCGAAAAGCTTTTCAAGGGTGGGGAACGAATGAAGGATTGATAATATCAATCCTGGGTCACAGAAACGCGGCTCAGCGTAAGTTGATTCGTGAAGCTTATAGTACAACCCATGGAGAAGATCTTCTTAAAGATTTAGACAAAGAACTTTCAAGTGACTTTGAGCGGGCTGTGATGGTTTGGACATTGGATCCTTCTGAGCGTGATGCCTTTTTAGCAAATGAAGCCACTAAGATGTTGACTTCAAACAATTGGGTCATTTTGGAAATTGCTTCCACTAGATCTTCACTTGACCTCCTAAAGGCAAAACAAGCATATCAAGCCCGTTTCAAAAAGTCCCTTGAAGAAGACGTTGCCTATCATACTAAAGGGGACATCCGCAAGCTATTGGTTCCTCTTGTGAGCACATTCCGTTATGAGGGGGATGAGGTGAACATGACATTGGCAAAATCTGAGGCTAAACTGCTTCACCAGAAGATTGCAGAGAAGGCCTACAACGACGAGGACCTGATCAGGATTTTGTCAACAAGGAGTAAAGCACAGTTAACAGCGACACTAAATCAGTACAACAATGAGTTCGGGAATGCCATAAACAAGGATCTGAAAACTGATCCAAAAGATGAATATCTGCAATTATTGAGGGCAGCCATTAAGTGCTTGACTTACCCTGAGAAATATTTTGCAAAAGTCTTGAGGCTGGCTATAAACAAGCTAGGAACTGATGAAGGGGCCCTTACTAGAGTGGTGACAACCAGAGCTGAGGTTGATTTGCAGCGAATTGCTGAGGAATACCAAAGAAGAAACAGCATTCCTCTGGACCGCGCAATAGCCAGTGACACTTCTGGAGACTATCAGAGCATTCTCCTTGCACTGGTTGGACATGAGGATTAA

>Glyma08g14460.2   sequence type=CDS   gene model=Glyma08g14460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACGTTGAAGGTTCCTGCACAACTTCCTTCTCCATTGGAAGACAGTGAGCAATTGCGAAAAGCTTTTCAAGGGTGGGGAACGAATGAAGGATTGATAATATCAATCCTGGGTCACAGAAACGCGGCTCAGCGTAAGTTGATTCGTGAAGCTTATAGTACAACCCATGGAGAAGATCTTCTTAAAGATTTAGACAAAGAACTTTCAAGTGACTTTGAGCGGGCTGTGATGGTTTGGACATTGGATCCTTCTGAGCGTGATGCCTTTTTAGCAAATGAAGCCACTAAGATGTTGACTTCAAACAATTGGGTCATTTTGGAAATTGCTTCCACTAGATCTTCACTTGACCTCCTAAAGGCAAAACAAGCATATCAAGCCCGTTTCAAAAAGTCCCTTGAAGAAGACGTTGCCTATCATACTAAAGGGGACATCCGCAAGCTATTGGTTCCTCTTGTGAGCACATTCCGTTATGAGGGGGATGAGGTGAACATGACATTGGCAAAATCTGAGGCTAAACTGCTTCACCAGAAGATTGCAGAGAAGGCCTACAACGACGAGGACCTGATCAGGATTTTGTCAACAAGGAGTAAAGCACAGTTAACAGCGACACTAAATCAGTACAACAATGAGTTCGGGAATGCCATAAACAAGGATCTGAAAACTGATCCAAAAGATGAATATCTGCAATTATTGAGGGCAGCCATTAAGTGCTTGACTTACCCTGAGAAATATTTTGCAAAAGTCTTGAGGCTGGCTATAAACAAGCTAGGAACTGATGAAGGGGCCCTTACTAGAGTGGTGACAACCAGAGCTGAGGTTGATTTGCAGCGAATTGCTGAGGAATACCAAAGAAGAAACAGCATTCCTCTGGACCGCGCAATAGCCAGTGACACTTCTGGAGACTATCAGAGCATTCTCCTTGCACTGGTTGGACATGAGGATTAA

>Glyma08g14460.3   sequence type=CDS   gene model=Glyma08g14460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTGGACATTGGATCCTTCTGAGCGTGATGCCTTTTTAGCAAATGAAGCCACTAAGATGTTGACTTCAAACAATTGGGTCATTTTGGAAATTGCTTCCACTAGATCTTCACTTGACCTCCTAAAGGCAAAACAAGCATATCAAGCCCGTTTCAAAAAGTCCCTTGAAGAAGACGTTGCCTATCATACTAAAGGGGACATCCGCAAGCTATTGGTTCCTCTTGTGAGCACATTCCGTTATGAGGGGGATGAGGTGAACATGACATTGGCAAAATCTGAGGCTAAACTGCTTCACCAGAAGATTGCAGAGAAGGCCTACAACGACGAGGACCTGATCAGGATTTTGTCAACAAGGAGTAAAGCACAGTTAACAGCGACACTAAATCAGTACAACAATGAGTTCGGGAATGCCATAAACAAGGATCTGAAAACTGATCCAAAAGATGAATATCTGCAATTATTGAGGGCAGCCATTAAGTGCTTGACTTACCCTGAGAAATATTTTGCAAAAGTCTTGAGGCTGGCTATAAACAAGCTAGGAACTGATGAAGGGGCCCTTACTAGAGTGGTGACAACCAGAGCTGAGGTTGATTTGCAGCGAATTGCTGAGGAATACCAAAGAAGAAACAGCATTCCTCTGGACCGCGCAATAGCCAGTGACACTTCTGGAGACTATCAGAGCATTCTCCTTGCACTGGTTGGACATGAGGATTAA

Predicted protein sequences of Glyma08g14460

Limit To All Plant Sequences

>Glyma08g14460.1   sequence type=predicted peptide   gene model=Glyma08g14460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLKVPAQLPSPLEDSEQLRKAFQGWGTNEGLIISILGHRNAAQRKLIREAYSTTHGEDLLKDLDKELSSDFERAVMVWTLDPSERDAFLANEATKMLTSNNWVILEIASTRSSLDLLKAKQAYQARFKKSLEEDVAYHTKGDIRKLLVPLVSTFRYEGDEVNMTLAKSEAKLLHQKIAEKAYNDEDLIRILSTRSKAQLTATLNQYNNEFGNAINKDLKTDPKDEYLQLLRAAIKCLTYPEKYFAKVLRLAINKLGTDEGALTRVVTTRAEVDLQRIAEEYQRRNSIPLDRAIASDTSGDYQSILLALVGHED*

>Glyma08g14460.2   sequence type=predicted peptide   gene model=Glyma08g14460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLKVPAQLPSPLEDSEQLRKAFQGWGTNEGLIISILGHRNAAQRKLIREAYSTTHGEDLLKDLDKELSSDFERAVMVWTLDPSERDAFLANEATKMLTSNNWVILEIASTRSSLDLLKAKQAYQARFKKSLEEDVAYHTKGDIRKLLVPLVSTFRYEGDEVNMTLAKSEAKLLHQKIAEKAYNDEDLIRILSTRSKAQLTATLNQYNNEFGNAINKDLKTDPKDEYLQLLRAAIKCLTYPEKYFAKVLRLAINKLGTDEGALTRVVTTRAEVDLQRIAEEYQRRNSIPLDRAIASDTSGDYQSILLALVGHED*

>Glyma08g14460.3   sequence type=predicted peptide   gene model=Glyma08g14460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVWTLDPSERDAFLANEATKMLTSNNWVILEIASTRSSLDLLKAKQAYQARFKKSLEEDVAYHTKGDIRKLLVPLVSTFRYEGDEVNMTLAKSEAKLLHQKIAEKAYNDEDLIRILSTRSKAQLTATLNQYNNEFGNAINKDLKTDPKDEYLQLLRAAIKCLTYPEKYFAKVLRLAINKLGTDEGALTRVVTTRAEVDLQRIAEEYQRRNSIPLDRAIASDTSGDYQSILLALVGHED*

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