Glyma08g14450 - SoyBase

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Report for Sequence Feature Glyma08g14450

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10490255
stop:	10493445
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g14450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44820	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 70 Blast hits to 70 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). \| chr2:18484690-18485517 FORWARD LENGTH=194	SoyBase	E_val: 4.00E-35	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KT24	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KT24_SOYBN	SoyBase	E_val: 2.00E-129	ISS

Expression Patterns of Glyma08g14450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g14450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g136100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g14450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g14450

Limit To All Plant Sequences

>Glyma08g14450.4   sequence type=transcript   gene model=Glyma08g14450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTCGTTTTGATGGCTAAAAAAAAATACAAAATCTGAAAGAAAGAAAAGGCACAGACACGATCGTTAAGTCTCACTCTCAACACCTTCGAACCCTAGCACAGCCCCGTGCCGTCAACTGTCAACCACCCTCCGTCCACCGCACGCGCACCTCGCCACCAACATCCAGCAACTCGCACCAGAACAGCACCTCCCATCGTTGACGCACAAAGTAGCAGGCCGTCGCACTCGCGCCCTCCCGTCCACAGTCGCAGTCGGACCAGCCACCAGTGATGGGAAAGATGTGCAAGAATAAGAAACAAGCTGGTGGGCATGGACCTCCAAGAGAGCAAACTGATACACAGGAACAAGAAATGGACATAAGGAAGATTATGAAAGATGTTGAAAATTTTAGCTACTCACATATGTCATGGAAAGAACGCAAAAAGATTGAAAATAGGAATGTTGTTTCTCTTGGTGGGAAGCCCCAAAAGAATCAGAGATTACCTTTAAGTGTGGCTCGACTAATGATGAAGAAACAAAAGGAGAGGGAGCAGAAAATGCTCCAAGAGCGTTTGATTCTTGGACAATTTGGGGGAAAGCTTGGTGGTAGCAGTAAAAGATCTGCTGGGAAGCACAAGCCAGGAAACAGGGGTCTGAAATCAAGCGAAGGTCATTTTAGAAATGGCATACTCAATGTGAAGCATTTGTTAAATTCAACAGCATCAAGAGATCGTGAAACTGGAACCAATATGTCCAATACATGGAAAGGGAAAGGTGGTAAGAAGAAAAATGGCAACAAGGGTGCTGGTGGTAAGAAGCACCGTTCAGCGCATCCTTGTGAATAACGTGTTTTGGGAATATGGAGGAGTCCTTTTTAATATGTATGACCCTTGGGTAAGCTTTTCAGTTTTGACAGAGAGTGAAATGGATAGAATAGAAAACAGGACAATAATGTCTTGTGTATTCTGATAATTATAAAATTTGAACAAGACCTTGTGTCTTGTTTTGAGTTTTTGTGCTTATCAAACCCACTAGGACATTCGGCGTAGTACAATGGAATAATATATATTCTTGTCCTGTTTGAAGTGT

Coding sequences of Glyma08g14450

Limit To All Plant Sequences

>Glyma08g14450.3   sequence type=CDS   gene model=Glyma08g14450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAAGATGTGCAAGAATAAGAAACAAGCTGGTGGGCATGGACCTCCAAGAGAGCAAACTGATACACAGGAACAAGAAATGGACATAAGGAAGATTATGAAAGATGTTGAAAATTTTAGCTACTCACATATGTCATGGAAAGAACGCAAAAAGATTGAAAATAGGAATGTTGTTTCTCTTGGTGGGAAGCCCCAAAAGAATCAGAGATTACCTTTAAGTGTGGCTCGACTAATGATGAAGAAACAAAAGGAGAGGGAGCAGAAAATGCTCCAAGAGCGTTTGATTCTTGGACAATTTGGGGGAAAGCTTGGTGGTAGCAGTAAAAGATCTGCTGGGAAGCACAAGCCAGGAAACAGGGGTCTGAAATCAAGCGAAGGTCATTTTAGAAATGGCATACTCAATGTGAAGCATTTGTTAAATTCAACAGCATCAAGAGATCGTGAAACTGGAACCAATATGTCCAATACATGGAAAGGGAAAGGTGGTAAGAAGAAAAATGGCAACAAGGGTGCTGGTGGTAAGAAGCACCGTTCAGCGCATCCTTGTGAATAA

>Glyma08g14450.4   sequence type=CDS   gene model=Glyma08g14450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAAGATGTGCAAGAATAAGAAACAAGCTGGTGGGCATGGACCTCCAAGAGAGCAAACTGATACACAGGAACAAGAAATGGACATAAGGAAGATTATGAAAGATGTTGAAAATTTTAGCTACTCACATATGTCATGGAAAGAACGCAAAAAGATTGAAAATAGGAATGTTGTTTCTCTTGGTGGGAAGCCCCAAAAGAATCAGAGATTACCTTTAAGTGTGGCTCGACTAATGATGAAGAAACAAAAGGAGAGGGAGCAGAAAATGCTCCAAGAGCGTTTGATTCTTGGACAATTTGGGGGAAAGCTTGGTGGTAGCAGTAAAAGATCTGCTGGGAAGCACAAGCCAGGAAACAGGGGTCTGAAATCAAGCGAAGGTCATTTTAGAAATGGCATACTCAATGTGAAGCATTTGTTAAATTCAACAGCATCAAGAGATCGTGAAACTGGAACCAATATGTCCAATACATGGAAAGGGAAAGGTGGTAAGAAGAAAAATGGCAACAAGGGTGCTGGTGGTAAGAAGCACCGTTCAGCGCATCCTTGTGAATAA

Predicted protein sequences of Glyma08g14450

Limit To All Plant Sequences

>Glyma08g14450.3   sequence type=predicted peptide   gene model=Glyma08g14450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKMCKNKKQAGGHGPPREQTDTQEQEMDIRKIMKDVENFSYSHMSWKERKKIENRNVVSLGGKPQKNQRLPLSVARLMMKKQKEREQKMLQERLILGQFGGKLGGSSKRSAGKHKPGNRGLKSSEGHFRNGILNVKHLLNSTASRDRETGTNMSNTWKGKGGKKKNGNKGAGGKKHRSAHPCE*

>Glyma08g14450.4   sequence type=predicted peptide   gene model=Glyma08g14450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKMCKNKKQAGGHGPPREQTDTQEQEMDIRKIMKDVENFSYSHMSWKERKKIENRNVVSLGGKPQKNQRLPLSVARLMMKKQKEREQKMLQERLILGQFGGKLGGSSKRSAGKHKPGNRGLKSSEGHFRNGILNVKHLLNSTASRDRETGTNMSNTWKGKGGKKKNGNKGAGGKKHRSAHPCE*

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