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Report for Sequence Feature Glyma08g14420

Feature Type:gene_model
Chromosome:Gm08
Start:10475118
stop:10476092
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g14420
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G39880AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L23/L15e family protein | chr4:18504601-18505137 FORWARD LENGTH=178 SoyBaseE_val: 3.00E-35ISS
GO:0006354GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation SoyBaseN/AISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0009220GO-bp Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process SoyBaseN/AISS
GO:0042254GO-bp Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG4089 KOG Predicted mitochondrial ribosomal protein L23 JGI ISS
PTHR12059Panther RIBOSOMAL PROTEIN L23-RELATED JGI ISS
PTHR12059:SF5Panther SUBFAMILY NOT NAMED JGI ISS
PF00276PFAM Ribosomal protein L23 JGI ISS
UniRef100_B9SZ40UniRef Annotation by Michelle Graham. Most informative UniRef hit: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SZ40_RICCO SoyBaseE_val: 3.00E-35ISS
UniRef100_UPI000233872EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233872E related cluster n=1 Tax=unknown RepID=UPI000233872E SoyBaseE_val: 1.00E-75ISS

Expression Patterns of Glyma08g14420
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g14420 not represented in the dataset
Glyma08g14420 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g14420
ParalogEvidenceComments
Glyma05g31235 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g14420 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g135700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g14420
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g14420
>Glyma08g14420.2   sequence type=CDS   gene model=Glyma08g14420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACACATCACAAACCTTCCCATGACGCCACTGATGCCGGCCAGCACTTCCTCAAACAACATCAAAGAAATCGCGTTTAAGACTGCTCCTTCAGCTTCCAAGGTCGAAATCAAGCGTTTCCTCGAAACCTTCTACGGGTTCGAGGTCGAAAAGGTGCGAACTCTGAACATGAAGGGCAAGAAGAAGCGTTACGCGGGATCGTTGGTAGCAAAACCCGATTACAAGAAGGCCTACGTCACCCTCAAGAAACCACTTTCCTTCTCTCAGAACCCTTACCCCTTTGGTTCCACCGTAGAAGACAAGAAGAAAGAGAATATGTTGACCACTACTCACTACTAA
Predicted protein sequences of Glyma08g14420
>Glyma08g14420.2   sequence type=predicted peptide   gene model=Glyma08g14420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHITNLPMTPLMPASTSSNNIKEIAFKTAPSASKVEIKRFLETFYGFEVEKVRTLNMKGKKKRYAGSLVAKPDYKKAYVTLKKPLSFSQNPYPFGSTVEDKKKENMLTTTHY*






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