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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G10250 | AT | Annotation by Michelle Graham. TAIR10: Phototropic-responsive NPH3 family protein | chr5:3217028-3219368 REVERSE LENGTH=607 | SoyBase | E_val: 0 | ISS |
| GO:0009416 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to light stimulus | SoyBase | N/A | ISS |
| GO:0010087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phloem or xylem histogenesis | SoyBase | N/A | ISS |
| GO:0010305 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation | SoyBase | N/A | ISS |
| GO:0010588 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cotyledon vascular tissue pattern formation | SoyBase | N/A | ISS |
| GO:0048367 | GO-bp | Annotation by Michelle Graham. GO Biological Process: shoot development | SoyBase | N/A | ISS |
| GO:0080022 | GO-bp | Annotation by Michelle Graham. GO Biological Process: primary root development | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004871 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: signal transducer activity | SoyBase | N/A | ISS |
| PTHR13690 | Panther | KELCH-RELATED | JGI | ISS | |
| PTHR13690:SF174 | Panther | KELCH-RELATED | JGI | ISS | |
| PF03000 | PFAM | NPH3 family | JGI | ISS | |
| UniRef100_B9SZ41 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Root phototropism protein, putative n=1 Tax=Ricinus communis RepID=B9SZ41_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233A3D4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A3D4 related cluster n=1 Tax=unknown RepID=UPI000233A3D4 | SoyBase | E_val: 0 | ISS |
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Glyma08g14410 not represented in the dataset |
Glyma08g14410 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g31220 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g135600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g14410.2 sequence type=CDS gene model=Glyma08g14410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGTCCCTTCAAGTAGGGCAAGCACAACAAGACTCCGATGGAAGTGATAAGGTTTCAGACAAAAGCATTGTAGTTCCCAACAAATTCATCGCAATAGCTGATAGCTTCAAAGGAGAACATTCATGGTTCATTGCTCCTCAAATCCCAACAGATTTTTCAATTCAAGTCCAGGAAACCACTTATAATGTTCACAAGTACCCCTTGATATCAAAGTGCGGTTACATAGGACGATTGGAAATTCAGCCTTTGATATCAAATTCTGGCAATGTGCTCAACCTTGAAAACTTCCCAGGTGGATCTGAAACATTTGAAACAATTCTAAAGTTCTGTTATGGCCTCCCTATAGACTTCAGCCCAGATAACATAGCTGCACTAAGATGTGCATCAGAGTTCCTAGAGATGACTGAAGAACTAGAAGATGGAAACCTCATTTCTAAGAGTGAAGCTTTCCTCACCTTTGTTGTGCTTTCTTCATGGAAAGACACTATCACTGTTCTGAAATCATCTGAAAACCTATCTCCATGGGCTGAAAACCTCCAAATTGTAAGAAGATGCTGTGATTCCATTGCATGGAAAGCTTCTAAAGATGAGCTCACAAGCGAGGATGCAGCACCTAATCAAGAAAGCTGGTGGTTCAACGATGTGGCCGCCTTCCGCATTGATCATTTTATGCGGATCATTTCTGCAATAAGGGCAAAGGGAACCAAACCAGAGACCATTGGTAAATGTATCATGCAATATGCCAAGAGATGGCTGCCGGGAATGGAGGTGGAGTTAGAAGGGCTAAGAGGATATGGGCATGAAAAGTGTAACCTACAGTTCAGTATTTTTAGTGGGAAGAAGAAAGAAAGCAGTGGAAACAGCAAGGAGCAAAGAACAATTATTGAAAGCCTAATAAGCATTATTCCTCCTCAGCAAGATGCAGTCTCGTGTAAGTTCATGTTGCAGTTGTTAAAGATGGCCATGATGTATTCTGTATCACCAGCTCTCACAACAGACCTTGAAAAGAGAGTGAGTTTGGTGTTGGAAGATGCTGAGGTGAGTGATCTTCTAATTCCAAGATATCAAAATGGAGATCAAGGCAAAACGGTCATTTGCATGACTAATTCATCTGAAGAATGCACCATGCTAGACATAGATGTAGTGCAACGAATTGTGGAATACTTCTTGATGCATGAACAACAGCAGATTCAACAGCAACAGAAGACTAGGAAATTCAATATTAGTAGGCTCTTGGATAATTACCTAGCTGAAATTGCAAGAGATCCAAATCTTTCAATTACCAAGTTCCAAGTTTTTGCTGAATTGCTACCAGAAAATACTCGATCATATGATGATGGCCTATATAGAGCCATTGACACCTACCTCAAGACCCAGCCTTCACTGACCGAGCATGACCGTAAAAGACTCTGCAAAATCATGAACTGTGAAAAACTCTCACTTGATGCATGCCTGCATGCTGCACAAAATGAGAGATTGCCCCTAAGAACTGTTGTCCAGGTTCTATTTTCAGAGCAAGTAAAGATGAGGGCAGCAATGCATGAGAAAGAGCCAGCACAAATTGGAATCCAATCTGAACAAGAAGAAAACCAGACATCTGCAACTATGGACATTAAGGCACTCAAAGCAGAACTTGAGAATGTAAAGTCCCAAATGGTAGAACTGCAGAATGACTATTGTGAATTACAACAGGAGTATGAAAAGTTAAGCAACAAGCCAAAGAATTCATCAGGCTGGAGTTTAAATTGGCGGAAGATTAAGAACTCCTTACATACAAAACCAGCAGGAGTTGAAATTGGAGACAGACAGGATGCACCCAAGTCACCAAACACCATTCTACGTAGACTAAACCCTAGAAGAAGGCTCTCCATGTCTTAA
>Glyma08g14410.2 sequence type=predicted peptide gene model=Glyma08g14410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKSLQVGQAQQDSDGSDKVSDKSIVVPNKFIAIADSFKGEHSWFIAPQIPTDFSIQVQETTYNVHKYPLISKCGYIGRLEIQPLISNSGNVLNLENFPGGSETFETILKFCYGLPIDFSPDNIAALRCASEFLEMTEELEDGNLISKSEAFLTFVVLSSWKDTITVLKSSENLSPWAENLQIVRRCCDSIAWKASKDELTSEDAAPNQESWWFNDVAAFRIDHFMRIISAIRAKGTKPETIGKCIMQYAKRWLPGMEVELEGLRGYGHEKCNLQFSIFSGKKKESSGNSKEQRTIIESLISIIPPQQDAVSCKFMLQLLKMAMMYSVSPALTTDLEKRVSLVLEDAEVSDLLIPRYQNGDQGKTVICMTNSSEECTMLDIDVVQRIVEYFLMHEQQQIQQQQKTRKFNISRLLDNYLAEIARDPNLSITKFQVFAELLPENTRSYDDGLYRAIDTYLKTQPSLTEHDRKRLCKIMNCEKLSLDACLHAAQNERLPLRTVVQVLFSEQVKMRAAMHEKEPAQIGIQSEQEENQTSATMDIKALKAELENVKSQMVELQNDYCELQQEYEKLSNKPKNSSGWSLNWRKIKNSLHTKPAGVEIGDRQDAPKSPNTILRRLNPRRRLSMS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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