Report for Sequence Feature Glyma08g14330
Feature Type: gene_model
Chromosome: Gm08
Start: 10428446
stop: 10429992
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g14330
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G39920 AT
Annotation by Michelle Graham. TAIR10: C-CAP/cofactor C-like domain-containing protein | chr4:18515882-18516919 FORWARD LENGTH=345
SoyBase E_val: 5.00E-120 ISS
GO:0000226 GO-bp
Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization
SoyBase N/A ISS
GO:0000910 GO-bp
Annotation by Michelle Graham. GO Biological Process: cytokinesis
SoyBase N/A ISS
GO:0007021 GO-bp
Annotation by Michelle Graham. GO Biological Process: tubulin complex assembly
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
KOG2512
KOG
Beta-tubulin folding cofactor C
JGI ISS
PTHR15139 Panther
TUBULIN FOLDING COFACTOR C
JGI ISS
PF07986 PFAM
Tubulin binding cofactor C
JGI ISS
UniRef100_B9T3L6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Tubulin folding cofactor C, putative n=1 Tax=Ricinus communis RepID=B9T3L6_RICCO
SoyBase E_val: 3.00E-127 ISS
UniRef100_I1KT06 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KT06_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g14330
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g14330
Paralog Evidence Comments
Glyma05g31141 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g14330 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g134800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g14330
Coding sequences of Glyma08g14330
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g14330.1 sequence type=CDS gene model=Glyma08g14330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGAGGAGGAGGAGGCGGAGAAACAGAAGAAGCACTTAGCAATGCTGGAACGCCTTTCCAAACGCACCCAAAGCCGTTCGCAAAACCCCGATTCCTCATCATCAGAATCCTCCACTTCCTCCATCCTTTCACGCTTCACCCACTTAAAATCCTCGATTGAGTCCCAACTCGCCCAATCCCAATCCATTTCCTCCGACCCCTCCAACCTCAAACTCCACTTCAATCAAATCTCCGAATCAATCTCCGATTTAGAAAAATTCGTCGCCGAAAACTCCTACTCCCTACCCTCCTACGACGTCCGAACCTCCCTCAAAACCGTCTCCGACTTAAAGCACTCCCTCGACGACCTCACTTCCCAACTTCTCCCCAAAAAGAAATTCTCATTCAAAAATAAACCCACCACCAAGAAAGAATACAAGGATTCCGCTATTCCACTACCCACACAACCCCCTCAACTCTCCACGCGCCTTGCGCCGCGTGACTCGCCGGGGTTCCGAAACAAAACCGCTGAGCTTTTAATTTCGGACTTTCGAGGATCCGAGGTTGGGGAATTCACCGTTTCGGATCTCGATTCCTGCCAAGTCAGGATAATAGGTTCCGTCAGGGCGCTTTTCGTTCATAGGTTGAAGAATTCTAGGGTTTACGTGGGCCCCGTGACGGGGTCGGTTCTCATTGAGGAAGCGGAGGGTTGCGTCTTCGTGTTGGCGTCGCATCAGATTCGGATTCACGGTGCCAAAAGAAGCGATTTCTACCTTAGGGTTAGGAGCAGGCCGATAATTGAGGACTGTAATGGCGTCAGGTTTGCGCCGTATTGTTTGAACTATGAAGGGATTGAGGAGGATCTTCGTGGCGCCGGTCTTGACGCCGAGACCGGAAATTGGAGCAATGTGGATGATTTCCGGTGGCTGCGCGCGGTGCAGTCTCCCAATTGGTCGGTTTTGCCGGAGAATGAGAGGGTTGGGACTGTTGAGATATCCAATTTGAAAAATGAGGATAAGGAGATTTGA
Predicted protein sequences of Glyma08g14330
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g14330.1 sequence type=predicted peptide gene model=Glyma08g14330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEEEEEAEKQKKHLAMLERLSKRTQSRSQNPDSSSSESSTSSILSRFTHLKSSIESQLAQSQSISSDPSNLKLHFNQISESISDLEKFVAENSYSLPSYDVRTSLKTVSDLKHSLDDLTSQLLPKKKFSFKNKPTTKKEYKDSAIPLPTQPPQLSTRLAPRDSPGFRNKTAELLISDFRGSEVGEFTVSDLDSCQVRIIGSVRALFVHRLKNSRVYVGPVTGSVLIEEAEGCVFVLASHQIRIHGAKRSDFYLRVRSRPIIEDCNGVRFAPYCLNYEGIEEDLRGAGLDAETGNWSNVDDFRWLRAVQSPNWSVLPENERVGTVEISNLKNEDKEI*