Glyma08g14330 - SoyBase

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Report for Sequence Feature Glyma08g14330

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10428446
stop:	10429992
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g14330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39920	AT	Annotation by Michelle Graham. TAIR10: C-CAP/cofactor C-like domain-containing protein \| chr4:18515882-18516919 FORWARD LENGTH=345	SoyBase	E_val: 5.00E-120	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000910	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis	SoyBase	N/A	ISS
GO:0007021	GO-bp	Annotation by Michelle Graham. GO Biological Process: tubulin complex assembly	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
KOG2512	KOG	Beta-tubulin folding cofactor C	JGI		ISS
PTHR15139	Panther	TUBULIN FOLDING COFACTOR C	JGI		ISS
PF07986	PFAM	Tubulin binding cofactor C	JGI		ISS
UniRef100_B9T3L6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tubulin folding cofactor C, putative n=1 Tax=Ricinus communis RepID=B9T3L6_RICCO	SoyBase	E_val: 3.00E-127	ISS
UniRef100_I1KT06	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KT06_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g14330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g14330

Paralog	Evidence	Comments
Glyma05g31141	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g14330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g134800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g14330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g14330

Limit To All Plant Sequences

>Glyma08g14330.1   sequence type=CDS   gene model=Glyma08g14330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGGAGGAGGAGGCGGAGAAACAGAAGAAGCACTTAGCAATGCTGGAACGCCTTTCCAAACGCACCCAAAGCCGTTCGCAAAACCCCGATTCCTCATCATCAGAATCCTCCACTTCCTCCATCCTTTCACGCTTCACCCACTTAAAATCCTCGATTGAGTCCCAACTCGCCCAATCCCAATCCATTTCCTCCGACCCCTCCAACCTCAAACTCCACTTCAATCAAATCTCCGAATCAATCTCCGATTTAGAAAAATTCGTCGCCGAAAACTCCTACTCCCTACCCTCCTACGACGTCCGAACCTCCCTCAAAACCGTCTCCGACTTAAAGCACTCCCTCGACGACCTCACTTCCCAACTTCTCCCCAAAAAGAAATTCTCATTCAAAAATAAACCCACCACCAAGAAAGAATACAAGGATTCCGCTATTCCACTACCCACACAACCCCCTCAACTCTCCACGCGCCTTGCGCCGCGTGACTCGCCGGGGTTCCGAAACAAAACCGCTGAGCTTTTAATTTCGGACTTTCGAGGATCCGAGGTTGGGGAATTCACCGTTTCGGATCTCGATTCCTGCCAAGTCAGGATAATAGGTTCCGTCAGGGCGCTTTTCGTTCATAGGTTGAAGAATTCTAGGGTTTACGTGGGCCCCGTGACGGGGTCGGTTCTCATTGAGGAAGCGGAGGGTTGCGTCTTCGTGTTGGCGTCGCATCAGATTCGGATTCACGGTGCCAAAAGAAGCGATTTCTACCTTAGGGTTAGGAGCAGGCCGATAATTGAGGACTGTAATGGCGTCAGGTTTGCGCCGTATTGTTTGAACTATGAAGGGATTGAGGAGGATCTTCGTGGCGCCGGTCTTGACGCCGAGACCGGAAATTGGAGCAATGTGGATGATTTCCGGTGGCTGCGCGCGGTGCAGTCTCCCAATTGGTCGGTTTTGCCGGAGAATGAGAGGGTTGGGACTGTTGAGATATCCAATTTGAAAAATGAGGATAAGGAGATTTGA

Predicted protein sequences of Glyma08g14330

Limit To All Plant Sequences

>Glyma08g14330.1   sequence type=predicted peptide   gene model=Glyma08g14330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEEEAEKQKKHLAMLERLSKRTQSRSQNPDSSSSESSTSSILSRFTHLKSSIESQLAQSQSISSDPSNLKLHFNQISESISDLEKFVAENSYSLPSYDVRTSLKTVSDLKHSLDDLTSQLLPKKKFSFKNKPTTKKEYKDSAIPLPTQPPQLSTRLAPRDSPGFRNKTAELLISDFRGSEVGEFTVSDLDSCQVRIIGSVRALFVHRLKNSRVYVGPVTGSVLIEEAEGCVFVLASHQIRIHGAKRSDFYLRVRSRPIIEDCNGVRFAPYCLNYEGIEEDLRGAGLDAETGNWSNVDDFRWLRAVQSPNWSVLPENERVGTVEISNLKNEDKEI*

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