Glyma08g14260 - SoyBase

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Report for Sequence Feature Glyma08g14260

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10374916
stop:	10376057
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g14260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10310	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:3241666-3242127 REVERSE LENGTH	SoyBase	E_val: 1.00E-28	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6SZ30	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZ30_SOYBN	SoyBase	E_val: 1.00E-87	ISS
UniRef100_G7J3Q1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EPIDERMAL PATTERNING FACTOR-like protein n=1 Tax=Medicago truncatula RepID=G7J3Q1_MEDTR	SoyBase	E_val: 2.00E-32	ISS

Expression Patterns of Glyma08g14260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g14260

Paralog	Evidence	Comments
Glyma05g31050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g14260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g134100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g14260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g14260

Limit To All Plant Sequences

>Glyma08g14260.1   sequence type=CDS   gene model=Glyma08g14260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCACTTAATTCATATCATTACTACACAAACACCTCCTTGCTCATCATACTTCTTCTCCATAATTTGTTCTCTCTATCTCTAGCTTCTGCCTCCAATCACCCTCAGCCTGCAATTTCTACAAGGGAACTGTTATTTGAGGAGAAAAACAGGCTAGGTTCAATTCCTCCTAGCTGTCATAACAAGTGCAATGATTGCCATCCATGCATGGCAGTTCAAGTGCCAACTTTGCCAAGCCATGACTCTAACCCTCCAGATCTTACCAAAACTGCAGCCATGGCAACTTTTCTTAACCCTTCTTCTCCGCAAGGCAACAGGTACTCCAATTACAAGCCATTGGGATGGAAATGCCATTGTGGTGACCACTTCTTCAACCCGTAA

Predicted protein sequences of Glyma08g14260

Limit To All Plant Sequences

>Glyma08g14260.1   sequence type=predicted peptide   gene model=Glyma08g14260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLNSYHYYTNTSLLIILLLHNLFSLSLASASNHPQPAISTRELLFEEKNRLGSIPPSCHNKCNDCHPCMAVQVPTLPSHDSNPPDLTKTAAMATFLNPSSPQGNRYSNYKPLGWKCHCGDHFFNP*

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