Report for Sequence Feature Glyma08g14230
Feature Type: gene_model
Chromosome: Gm08
Start: 10352328
stop: 10356295
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g14230
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G65270 AT
Annotation by Michelle Graham. TAIR10: RAB GTPase homolog A4A | chr5:26083437-26084550 FORWARD LENGTH=226
SoyBase E_val: 4.00E-128 ISS
GO:0007264 GO-bp
Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction
SoyBase N/A ISS
GO:0015031 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein transport
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0005525 GO-mf
Annotation by Michelle Graham. GO Molecular Function: GTP binding
SoyBase N/A ISS
KOG0087
KOG
GTPase Rab11/YPT3, small G protein superfamily
JGI ISS
PTHR24073 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24073:SF213 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00071 PFAM
Ras family
JGI ISS
UniRef100_Q08147 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein n=2 Tax=Papilionoideae RepID=Q08147_PEA
SoyBase E_val: 3.00E-138 ISS
UniRef100_UPI0002338725 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338725 related cluster n=1 Tax=unknown RepID=UPI0002338725
SoyBase E_val: 2.00E-150 ISS
Expression Patterns of Glyma08g14230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g14230
Paralog Evidence Comments
Glyma05g31020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g14230 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g133800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g14230
Coding sequences of Glyma08g14230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g14230.2 sequence type=CDS gene model=Glyma08g14230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGGTGCAGGAGGAGGGTATGGGGACGCGAACCAGAGGATAGACTACGTGTTCAAGGTGGTGCTGATAGGGGACTCGGCGGTGGGGAAGTCGCAGATACTAGCTCGGTTTGCGAGGAACGAGTTCAGCTTGGACTCCAAGTCCACCATCGGTGTTGAATTTCAGACAAGGACCTTGGTCATAGATCACAAGACCGTTAAGGCTCAGATCTGGGACACTGCTGGCCAAGAACGATACAGAGCAGTTACGAGTGCATACTACAGGGGTGCTGTGGGGGCAATGTTGGTTTATGACATCACTAAACGCCAAACCTTTGATCACATACCACGTTGGTTAGAAGAACTGCGCAACCATGCTGACAAGAACATAGTCATCATTCTTATAGGAAACAAATGTGATCTTGAGAGCCAGCGTGATGTACCCACCGAGGATGCAAAAGAATTTGCTGAGAAAGAAGGTTTATTTTTCTTAGAGACCTCAGCACTAGAAGCAACTAATGTTGAAACAGCCTTCATAACTGTCTTGACAGAAATATACAACATTGTCAACAAGAAGAACCTAACTGCTGATGAAAATCAGGGAAATGGGAACTCGGCATCTTTGTCTGGCCAGAAGATTATTGATATATATCACTTCATCAATAGTCATTGA
Predicted protein sequences of Glyma08g14230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g14230.2 sequence type=predicted peptide gene model=Glyma08g14230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAGAGGGYGDANQRIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLESQRDVPTEDAKEFAEKEGLFFLETSALEATNVETAFITVLTEIYNIVNKKNLTADENQGNGNSASLSGQKIIDIYHFINSH*