Report for Sequence Feature Glyma08g14170
Feature Type: gene_model
Chromosome: Gm08
Start: 10303663
stop: 10312295
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g14170
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G65290 AT
Annotation by Michelle Graham. TAIR10: LMBR1-like membrane protein | chr5:26089814-26094337 FORWARD LENGTH=733
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0008284 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2296
KOG
Integral membrane protein
JGI ISS
PTHR21355 Panther
UNCHARACTERIZED
JGI ISS
PF04791 PFAM
LMBR1-like membrane protein
JGI ISS
UniRef100_G7J381 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: LMBR1 domain-containing protein-like protein n=1 Tax=Medicago truncatula RepID=G7J381_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KSY6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSY6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g14170
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g14170
Paralog Evidence Comments
Glyma05g30970 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g14170 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g133200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g14170
Coding sequences of Glyma08g14170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g14170.1 sequence type=CDS gene model=Glyma08g14170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGTTGCAAAAGGGTATACCGTATAGGAGACTTTAGCAGAAAAGTGAGTGATCGGCACTGGGAGGATCCATCGAGAGAGATGTGGGTGTTTTACCTGATCTCTTTGCCCCTCACAGTGGGTATGGTACTATTCACGCTCAGATACTACGCTGCCCCACACGTCCCTCGCTACGTGCTTCTCACCGTTGGATACACCTGGCTCTCTTCCCTCTCCATCATCATCCTCGTCCCCGCCGACATTTGGACGACAATATCTTCCAACCATGATAACGGAGGCATTTCCTTCTTTTGGAGCTGGTCATATTGGAGTACGTTTTTGCTTACATGGGCTGTTGTGCCCCTTATTCAGGGTTTTGAAGATGCTGGGGACTTCACTGTTTCAGAAAGATTGAAGACTAGTTTACATGTTAACTTGATCTTTTATCTAATTGTGGGATCCATTGGCCTTTTTGGATTCATTCTTCTCATTATGATGCATAAGCGCTGGAGTGGAAGTCTTTTGGGATTAGCCATGGCCTGCTCAAATACTTTTGGACTTGTTACTGGTGCATTTCTTCTTGGCTTTGGTTTAAGCGAAATTCCCAAAAGCATTTGGAGAAATGCTGACTGGACAACCCGCCAGAAAGTTCTTTCCCACAAAATTGCTAAAATGGCTGTTAGGCTTGATGATGCTCACCAAGAACTTTCAAATGCTATTGTGGTTGCTCAAGACACATCTAACCAGATGTCCAGGCGTGATCCTCTGAGATGTTACATGGATGTAATTGATGATATGCTAACTCAAATGTTTAGGGAAGATCCATCCTTCAAACCACAAGGTGGCCGACTAGGAGAAAGCGACATTGATTATGATACTGACGAGAAGTCAATGGCAACACTAAGACGTCATCTTCGAGGAGCTACTGAGGAGTACTACAGGTATAAAAGTGTGTATATGACTTACGTGTTAGAAGCCCTTCAATTGGAAGACAAGATAAAGAATTATGAACGCCGCAACTCAACTGGATGGAAATATATTTCAAGCTTTAGACCTGCTCGGACTGGCAAGTTTGGGTCTTTATGTGACACTTTAGAATTTTTCTGGCAATGCATTTTAAGAAAGCAAGTTCAGAAAGGCTTGGCTGTTATACTTGGTGTCATGTCTGTTACAATTCTTTTAGCTGAGGCAACTCTTCTACCTAGTGTTGATCTATCACTTTTCTCGATTCTTATAAAATCTGTTGGAACACAGGAGGTGCTTGTGCAGGTACTTGCTTTTGTTCCTCTCATGTATATGTGCATCTGCACGTATTACTCCTTGTTCAAAATTGGAACATTGGTGTTTTACTCATTGACACCCCGACAGACCAGCTCAGTTAGCTTGCTTATGATATGCTCTATGATTGCTCGATATGCTCCCCCCATCTCATACAACTTCCTCAATCTTATTCGCCTTGGTTCTGATAAAACAACTATATTTGAACAGCGAATGGGGAACATTGATAATGCTGTCCCTTTCTTTGGAGATAAGTTTAACAGAATCTATCCACTTATTATGGTTATATACACCCTTTTGGTTGCAAGCAATTTCTTTGATAGGGTATTTGATTCTCTTGGGAGCTGGAAGAGATATGTTTTCGAAACTGAAACTGAAGATATGGATGGTTTTGATCCATCAGGGTTAATTATCTTGCAGAAAGAAAGATATTGGCTTGAGCAAGGAGGCAATGTAGGCGAGCAAGTTGTTCCACTAGTGAGGAATTTTAATGGAATTGATGTTGAATCTAGTGACAATATTATGGTGAAGAATGGTGTTGAAATGAAGGGAAATTCTGCTTTAGTTAATAAAGAAACAGATGGAAATCTGCCTAAAACTTTGAAGGAAGAGACAAGGAGATATAGCTCAAGCAGGGAAGCCATCAGCAGCAAGTATGCTGCTGTCAGACAGCAGAGTGAATTAACATCTGCGAAGGTTTCCTTGCTTGATCACGGCAATGCTCATTCTAGTAATGCTGCTGGAACTTCAGGCTTGGCTTCGACATGGCAAACAATGACAACAGGTTTTCGGAGTTTTGGGGCTAACTTAGGGGGAAAAGGATTTTTGCCCATACGGCAAACACAGGAAGCTAAGATGTCTCGTGTGTCCTCATCTGAGTCCCTTGATGATATATTTCAAAGACTGAAACGGCCTGCATTGGACCAAAATATTGACAATGACAAGGATAATTTGAAGAGGGGCAATATTTCTGGTCCTTCTAGATGA
Predicted protein sequences of Glyma08g14170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g14170.1 sequence type=predicted peptide gene model=Glyma08g14170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSCKRVYRIGDFSRKVSDRHWEDPSREMWVFYLISLPLTVGMVLFTLRYYAAPHVPRYVLLTVGYTWLSSLSIIILVPADIWTTISSNHDNGGISFFWSWSYWSTFLLTWAVVPLIQGFEDAGDFTVSERLKTSLHVNLIFYLIVGSIGLFGFILLIMMHKRWSGSLLGLAMACSNTFGLVTGAFLLGFGLSEIPKSIWRNADWTTRQKVLSHKIAKMAVRLDDAHQELSNAIVVAQDTSNQMSRRDPLRCYMDVIDDMLTQMFREDPSFKPQGGRLGESDIDYDTDEKSMATLRRHLRGATEEYYRYKSVYMTYVLEALQLEDKIKNYERRNSTGWKYISSFRPARTGKFGSLCDTLEFFWQCILRKQVQKGLAVILGVMSVTILLAEATLLPSVDLSLFSILIKSVGTQEVLVQVLAFVPLMYMCICTYYSLFKIGTLVFYSLTPRQTSSVSLLMICSMIARYAPPISYNFLNLIRLGSDKTTIFEQRMGNIDNAVPFFGDKFNRIYPLIMVIYTLLVASNFFDRVFDSLGSWKRYVFETETEDMDGFDPSGLIILQKERYWLEQGGNVGEQVVPLVRNFNGIDVESSDNIMVKNGVEMKGNSALVNKETDGNLPKTLKEETRRYSSSREAISSKYAAVRQQSELTSAKVSLLDHGNAHSSNAAGTSGLASTWQTMTTGFRSFGANLGGKGFLPIRQTQEAKMSRVSSSESLDDIFQRLKRPALDQNIDNDKDNLKRGNISGPSR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
