SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G10130 | AT | Annotation by Michelle Graham. TAIR10: endoplasmic reticulum-type calcium-transporting ATPase 3 | chr1:3311139-3321941 FORWARD LENGTH=998 | SoyBase | E_val: 5.00E-58 | ISS |
| GO:0006754 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP biosynthetic process | SoyBase | N/A | ISS |
| GO:0006812 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cation transport | SoyBase | N/A | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0006828 | GO-bp | Annotation by Michelle Graham. GO Biological Process: manganese ion transport | SoyBase | N/A | ISS |
| GO:0006891 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0055071 | GO-bp | Annotation by Michelle Graham. GO Biological Process: manganese ion homeostasis | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0012505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endomembrane system | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0005388 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium-transporting ATPase activity | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0015410 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: manganese-transporting ATPase activity | SoyBase | N/A | ISS |
| GO:0015662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG0202 | KOG | Ca2+ transporting ATPase | JGI | ISS | |
| PTHR24093 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24093:SF62 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00122 | PFAM | E1-E2 ATPase | JGI | ISS | |
| PF00702 | PFAM | haloacid dehalogenase-like hydrolase | JGI | ISS | |
| UniRef100_B9H6P8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Endoplasmic reticulum [ER]-type calcium ATPase n=1 Tax=Populus trichocarpa RepID=B9H6P8_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_B9H6P8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Endoplasmic reticulum [ER]-type calcium ATPase n=1 Tax=Populus trichocarpa RepID=B9H6P8_POPTR | SoyBase | E_val: 0 | ISS |
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Glyma08g14105 not represented in the dataset |
Glyma08g14105 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g30905 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g132600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g14105.1 sequence type=CDS gene model=Glyma08g14105 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTCATATTGGTTATCATCAGTGTCACCCTTCGTTTCTATCAGGAATACAGCAGCTCAAAAGCAGCAATGAAGCTTTCAGAATTTGTAAAATGTCCAATAAAAGTTCAAAGATGCGCCGGTAGAGTTGTTCAGAAAGAACTTGTAGTTCAAGTTGATCAGAGAGATGTAGTTCCAGGTGACATTGTGATTTTTGAACCTGGTGACCTCTTTCCAGGAGATATCAGGTTGTTATCTTCTAAACAACTTGTTGTAAGCCAGGCATCACTAACAGGGGAATCTTGGACAACTGACAAAACTGCTGAAATCAGAGAAGATCACAGCACTCCTTTATTGGATTTGAAGAACATCTGCTTTATGGGCACAAGCGTGGTATCTGGTACTGGAACAGGCCTAGTGATTTCCACTGGATCCAATACTTACATGAGCACCATGTTTTCAAAAGTTGGGAAGAAGAAGCCACCAGATGAATTTGAAAAGGTTGCATCTGCCCTCAATCCTCAGATGCTTCCCCTCATCATTAACACATGTCTTGCAAAAGGAGCACTTGCTATGGCTAAAGACAGATGTATAGTAAAAAGTTTAACATCTATACGCGACATGGGATCAATGGATATTCTTTGTATTGATAAGACAGGCACCCTTACAATAAATCACGCAATCATGGTTAATCATCTTGACTGCAGGGGTTTACCCCAAGAAAAAGTCTTACGCTATGCCTTTTTCAACTCTTACTTTAAGAGTGATCAGAAGTATCCTCTGGATGATGCAATTCTGGCATTTGTATATTCAAATGGATTCAGGTTTCAGCCATCTAAGTGGAGGAAGATAGATGAGATTCCTTTTGACTTCATAAGAAGAAGAGTATCTATCATCTTAGAAACAGAAGACAAACACTCACAATTCTTTGGCAGGTTCCTGGTAACAAAAGGAGCACTGTTAGAAGTATTGAGAGTTTGTTCTTTCATTGAGAATTTCGATAAAGATGAAATTTCGCCCTTCTCTTCAGATGATTATCAGCGGATTTTAAATCTCTCAGAAGATTTGAGCAATGAGGGGTTAAGGGTTATAGCAGTAGCTATAAGGAAGCTGAAAATGCCGCAAAAATGCGAAACAAGTAATGGAAGCAAAAGAGAAGAGGAGGATATTGAAAGAGACATGATGTTCCTTGGCCTCATAACATTTTTCGACCCACCAAAGGACTCAGCAAAGCAAGCACTGCGGCGTTTGTCTGAGAAGGGAGTGAAGGCAAAGGTTTTAACTGGTGACTCCCTCTCCTTGACAACAAGGGTATGCAGGGAAGTTGGCATAAGCACCACTCATGTAATAACAGGTCCCGAACTAGAGCAACTTGACCAAGACACTTTCCATGAAACAGTTCAAAGAGCCACAGTACTAGCCCGTCTCACCCCAATTCAGAAACAACGAGTGGTGCAATCCTTGCAAACAATTGAAAACCACGTTGTTGGGTTCTTAGGAGATGGAGTGAACGATTCACTAGCCTTAGATGCTGCCAATGTAAGCATTTCAGTGGACTCAGGTGTAGCCATTGCCAAAGACATGGCTGATATTATCTTACTTGAGAAAGACCTCAACGTGCTTGTTGCAGGAGTGGAGCATGGTAGAATCTCTTTTGGCAACACAATGAAGTATGTAAAGATGTCAGTGATAGCTAACTTGGGAAGTGTCATTTCACTCCTCATTGCAACACTTTTATTCAAGTATGAGCTCTTAACTTCTAGACAGCTTCTTACTCAGAATTTCATCTACAGTGTGGGACAGATTGCCATTGCTTGGGACAAAATGGATGAAGAGTATGTTAAGACACCTCACAAGTCCTCAGAGAGAGGCTTGTCCATGTTCATATTGTGGAATGCACCAGTGTGCACCCTTTGTGATGTGGCAACACTTTTGCTTCTTCGGTTTTATTACAAGGCTTACACCGATGTGACTCGAAAGTTTTTCCATTCTGCTTGGTTCGTTGAAGGTCTTCTATTGCAGACCCTCATCATCCATTTGATAAGGACAGAGAAAAATCCTTTCATACAGGATGTTGCATCTTGGCCTGTGATTTTCTCCACTGTTGTGACATCTGCAATTGGAATTGCACTTCCATTCACACTCATTGGGAAGATCTTGGGATTCTCCGTTATACCTATCTCATATTTCGGATTTTTGGTGCTTCTTTTTCTGGGGTATTTTGCAGTTGGCCAAGTGGTTAAGAGACTTTACATATTGGTTTATAAGAGATGGCTTTGA
>Glyma08g14105.1 sequence type=predicted peptide gene model=Glyma08g14105 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLILVIISVTLRFYQEYSSSKAAMKLSEFVKCPIKVQRCAGRVVQKELVVQVDQRDVVPGDIVIFEPGDLFPGDIRLLSSKQLVVSQASLTGESWTTDKTAEIREDHSTPLLDLKNICFMGTSVVSGTGTGLVISTGSNTYMSTMFSKVGKKKPPDEFEKVASALNPQMLPLIINTCLAKGALAMAKDRCIVKSLTSIRDMGSMDILCIDKTGTLTINHAIMVNHLDCRGLPQEKVLRYAFFNSYFKSDQKYPLDDAILAFVYSNGFRFQPSKWRKIDEIPFDFIRRRVSIILETEDKHSQFFGRFLVTKGALLEVLRVCSFIENFDKDEISPFSSDDYQRILNLSEDLSNEGLRVIAVAIRKLKMPQKCETSNGSKREEEDIERDMMFLGLITFFDPPKDSAKQALRRLSEKGVKAKVLTGDSLSLTTRVCREVGISTTHVITGPELEQLDQDTFHETVQRATVLARLTPIQKQRVVQSLQTIENHVVGFLGDGVNDSLALDAANVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRISFGNTMKYVKMSVIANLGSVISLLIATLLFKYELLTSRQLLTQNFIYSVGQIAIAWDKMDEEYVKTPHKSSERGLSMFILWNAPVCTLCDVATLLLLRFYYKAYTDVTRKFFHSAWFVEGLLLQTLIIHLIRTEKNPFIQDVASWPVIFSTVVTSAIGIALPFTLIGKILGFSVIPISYFGFLVLLFLGYFAVGQVVKRLYILVYKRWL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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