Glyma08g14040 - SoyBase

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Report for Sequence Feature Glyma08g14040

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10205355
stop:	10212039
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g14040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67850	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF707) \| chr1:25439204-25441904 FORWARD LENGTH=404	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PF05212	PFAM	Protein of unknown function (DUF707)	JGI		ISS
UniRef100_I1KSX5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSX5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q94F37	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT1G67850 protein n=1 Tax=Arabidopsis thaliana RepID=Q94F37_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g14040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g14040

Paralog	Evidence	Comments
Glyma05g30830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g14040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g132000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g14040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g14040

Limit To All Plant Sequences

>Glyma08g14040.1   sequence type=CDS   gene model=Glyma08g14040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATCAGTTCTCGAAGTTCTTCCAACAGAAAACCAAGTGATAGTATGAGGCTTATTGTGACAACTTTTGTTGGAATAGTTTTTGGCTTCTTTATAGGAGTATCATTTCCAGCATTGACTACAAAGTTGAATCTCCCATCCAGCCTGCTTCCTGCCATTGATATTTCTTACATTCAAGAGAAATATGCTGGTGGCAATGCACCGTCTTTTGTGAAGAATAATAACAGCATCTCATCAAAGCATCGGTTAATAAACGATACATTCAAGATATGGGTTCCATCAAATCCAAGAGGTGCAGAAAGATTACCTCCTGAGATTATTGAAGCTGAGACAGACTTTTATTTGCGTAGATTGTGGGGTCAGCCCAGTGAGGATTTAACATCAAAGCCAAAGTACCTTGTGACTTTCACTGTTGGTTATAATCAGAGATATAATATTGATGCAAATGTGAAAAAGTTCTCAGAGAACTTTACAATAGTTCTATTTCATTATGATGGCCACACAACTGAATGGGATGAGTTTGAGTGGTCAAAGCGGGCAATTCATGTGAGTGTTCGCAAACAGACCAAATGGTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTATATTTTTATATGGGATGAAGACCTGGGTGTTGAACATTTTAATGCAGAGGAATACTTAAAACTGGTGAAGAAGCACGGGTTGGAGATTTCACAGCCTGGTTTGGAACCTAATAAAGGATTGACATGGCAAATGACAAAGAGAAGAGGTGATCGTGAAGTTCACAAAGAAACAGAGGAGAAACCAGGATGGTGCGCTGACCCCCATCTGCCTCCTTGTGCAGCATTTGTTGAGATTATGGCTCCAGTGTTTTCACGAGATGCATGGCGTTGTGTCTGGCATATGATTCAGAATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTTGAGCCTGCCCACGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAGGGAGAATCACAACCTGGGAAAGCGCCATGGCATGGGGTGAGGGAGAGGTGTAAAAGGGAGTGGACAATGTTCCAGAGTCGGTTGGCAAATGCAGAAGACGCATATTACAGGGCCGTGGGAGGGGATATGTTTAATTCGACTACTCCTTAG

Predicted protein sequences of Glyma08g14040

Limit To All Plant Sequences

>Glyma08g14040.1   sequence type=predicted peptide   gene model=Glyma08g14040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGISSRSSSNRKPSDSMRLIVTTFVGIVFGFFIGVSFPALTTKLNLPSSLLPAIDISYIQEKYAGGNAPSFVKNNNSISSKHRLINDTFKIWVPSNPRGAERLPPEIIEAETDFYLRRLWGQPSEDLTSKPKYLVTFTVGYNQRYNIDANVKKFSENFTIVLFHYDGHTTEWDEFEWSKRAIHVSVRKQTKWWYAKRFLHPDIVAPYDYIFIWDEDLGVEHFNAEEYLKLVKKHGLEISQPGLEPNKGLTWQMTKRRGDREVHKETEEKPGWCADPHLPPCAAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIIHQSVPSLGNQGESQPGKAPWHGVRERCKREWTMFQSRLANAEDAYYRAVGGDMFNSTTP*

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