SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G67840 | AT | Annotation by Michelle Graham. TAIR10: chloroplast sensor kinase | chr1:25434156-25436839 FORWARD LENGTH=611 | SoyBase | E_val: 4.00E-146 | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0009637 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to blue light | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of proton transport | SoyBase | N/A | ISS |
| GO:0010468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of gene expression | SoyBase | N/A | ISS |
| GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0080005 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem stoichiometry adjustment | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0000155 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphorelay sensor kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| PTHR24761 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24761:SF185 | Panther | JGI | ISS | ||
| UniRef100_B9SVM1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SVM1_RICCO | SoyBase | E_val: 6.00E-153 | ISS |
| UniRef100_UPI000233A3CD | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A3CD related cluster n=1 Tax=unknown RepID=UPI000233A3CD | SoyBase | E_val: 0 | ISS |
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Glyma08g14006 not represented in the dataset |
Glyma08g14006 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g30800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g131800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g14006.1 sequence type=CDS gene model=Glyma08g14006 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTCCCAGCACCGACTTCCACCGACTCTGCCTCCACCTCTTTCGCAGAATCGTTCCCGAAGCCCTCCTCTCGTTATGTGATGGGTTGGAGCTGTGGTGGGTTGCACTGTACCCTGGAGAGGCAGAGGCAGAGGGCATTGTCATTCTTGTGGGTCATTTTAATATTCCTGCAGGCTTGCGTGCTGCCAAGGCCACGCTTTCCAATTCGCAAGTTAATGTTGTCCCTGAATGTAAGGCTGTGGTTCTTCCGATGGTGAAACACCCATTTGTTGTTGGTTTCTTGGTTGCTGAGCTTCCATTGGTGGAGGAAAAGTGCCAGAAATCTAAAAGTGATGGGCCAGAAAATCTCATGACTGTTGAGGAACCTTATTCATTTCCTCCCTTTTTGGATTTAGACAAGAAGTCAAGGGAAATTCAGAATCTTCAGGTCAAGGATGAGGCAGTTGGTATGCATAATTTCACTTCTGAGCAAAGATCAAATACTGTCAACATTTCACTCATGGTTATGCTACATTTACGGAAAGCAATGTTAATTCAGCAATCAGCATGGCAAAATAATGTCAGGATGGCTAATCTGGTTGAGCAAATTTCATATGACATTGTTGAAGACCTCTTGGTGCAAGGTGATCGTCTGAGGGATGTTCTCCATCAACTACAGGATACCGTTTATTTGACAAAGACAAATATAGTGCGCTACAATGAAGAAGCAATCAAGAAAATGAATGGTTTTACTCACATACTTGCTGAATGCATGTTTGGGGATGTCTCTGCAAATAAAATGAAAAAATCTAGTGAGTCACTTTCTCTAAGTGCTGCTGTCCAGGATATAGAGATGCCACTGCCACCTTTGGCCCTTGCTCCATTGCAACATGGAATCAGATCATGCAATGTTTCTCAAGTATTGGAAGACTTGGTGGATTCAGTGAGACCACTTGCCCAGGGTAAAAAACGTGTAGTAGAACTAAGTGAACTCTCATCATCACCTTTGCTAGCTGCTGTAGAAGAACCTGCATTGCACCAGGCTTTCAGCAATCTTATTGAAGGTGCTTTACTAATCACACATGTTGGAGGAAAGGTTGAAATTGTATCTAAGGCAGCACCAGCTGGTGGTACCCTTGTACTTATTGATGATGATGGACCTGGTATGCACTATATGACTCGGATGCACTCACTCACACCTCATGGACGAGAACTGTTGTCTGATAATATGATTGAAGACAGTATGACTTGGAAGTTTGTTGCTGGGTTGACTGTTGCTTATGCTCCTCTTGGAGCTGGGGGAACTCGTGTGGAACTCTGGCTTCCTTCATCAATTGTACAGTCTGATTTGAGCAGCCACGTCCAAGAGGTATAG
>Glyma08g14006.1 sequence type=predicted peptide gene model=Glyma08g14006 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLPSTDFHRLCLHLFRRIVPEALLSLCDGLELWWVALYPGEAEAEGIVILVGHFNIPAGLRAAKATLSNSQVNVVPECKAVVLPMVKHPFVVGFLVAELPLVEEKCQKSKSDGPENLMTVEEPYSFPPFLDLDKKSREIQNLQVKDEAVGMHNFTSEQRSNTVNISLMVMLHLRKAMLIQQSAWQNNVRMANLVEQISYDIVEDLLVQGDRLRDVLHQLQDTVYLTKTNIVRYNEEAIKKMNGFTHILAECMFGDVSANKMKKSSESLSLSAAVQDIEMPLPPLALAPLQHGIRSCNVSQVLEDLVDSVRPLAQGKKRVVELSELSSSPLLAAVEEPALHQAFSNLIEGALLITHVGGKVEIVSKAAPAGGTLVLIDDDGPGMHYMTRMHSLTPHGRELLSDNMIEDSMTWKFVAGLTVAYAPLGAGGTRVELWLPSSIVQSDLSSHVQEV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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