Glyma08g13980 - SoyBase

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Report for Sequence Feature Glyma08g13980

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10171718
stop:	10177085
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g13980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G26400	AT	Annotation by Michelle Graham. TAIR10: eukaryotic translation initiation factor 4B1 \| chr3:9666616-9669081 FORWARD LENGTH=532	SoyBase	E_val: 5.00E-145	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
PTHR13290	Panther	TRANSLATION INITIATION FACTOR 4H FAMILY	JGI		ISS
PTHR13290:SF5	Panther		JGI		ISS
PF06273	PFAM	Plant specific eukaryotic initiation factor 4B	JGI		ISS
UniRef100_B9SVM6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Translation initiation factor, putative n=1 Tax=Ricinus communis RepID=B9SVM6_RICCO	SoyBase	E_val: 5.00E-147	ISS
UniRef100_I1KSX1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KSX1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g13980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g13980

Paralog	Evidence	Comments
Glyma05g30786	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g13980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g131600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g13980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g13980

Limit To All Plant Sequences

>Glyma08g13980.1   sequence type=CDS   gene model=Glyma08g13980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCAAACCCTGGGGCAACATCGGAGCCTGGGCCGCCGATTCCGAGCGGGCCGAAGCCGAAGAGGCCGAGGCCCAGGCTGCGGCCGCGGCGGTTGAGCCCCAAAGCTTTCCCAGCCTCAAGGAGGCCGTGAACTCCAAGCCCAAGAAGAAGAAGGGAACCACCATCACGCTTTCCGAGTTCAACCGTGGCGGTTTCGACCAGGGCCTTACGCGCGACGAGATGCTCACCCTTCCGACCGGGCCCAAGGAGCGTTCCGCCGAGGAAATGCAGTTCAACCGCCTCGGCGGCGGTTTCTCCTCCTACGACCGCTCCGGCGGTCGCTCGCGCGACCGCGACGGTGGCAACAACGAAGGTTCGTGGGGCGGAGGAGGCAGAAGATCCTACGGTGGATTCGACGAGGAGCGCAGGGGTCCGAATCCTAGGGTTTCGGAACTCGATCAGCCGTCCAGGGCTGATGAGGTTGATAATTGGGCGTCCGTGAAGAAATCTCTCCCTGCCTACGATTCCGGTCGCCAGAATCGCTATGGTGGTGGCGGAGGCGGCGGTTTTGGTGGTAGTTCTGGTGGTGGTGGTTTTGGTGGTAGTTCTGGTGGTGGTGGTTTTGGTGGTGGCGGCGGTTTTGGTGGTGGTGGTGGTGGGGGCGGATTTGGAGGCGCGTCTAGGGCTGATGATGTGGACAATTGGGCGGTTGGTAAGAAGCCTGCTCCTGTTAGATCTTCCAATTTCGGTTCCAGTTTTCGCGATTCCGGCGTGGAGCCTGATCGTTGGACGAGAGGGGATCCGCCGCGTGAGGTTGAGCAGCGGACGGAGAGGCCAAGGCTGGTGTTGGATCCGCCTCGAGGCGATGGTTTGGTGAATGAGTCTCCGGTGAAGGCGATGGATAAGGCGAATCCGTTTGGGGCGGCGAGGCCGCGGGAGGAGGTGTTGGCTGAGAAGGGTTTGGATTGGAAAAAGCTGGATTCGGAGATTGAGACTAAGAAGACGAGCCGTCCCACGAGTTCGCACTCTAGCAGGCCTTCCAGTGCTCAGTCCAATCGTTCTGAGGGTCCCGGGTTGCAGGGGACCGATGCTGTGGTTAAATCCAGGCCCAAGGTGAACCCCTTTGGGGATGCCAAGCCTAGGGAGGCTGTGCTGGGCGAGCGAGGCATGGATTGGAGGAAAATTGATCTTGAATTGGAGCGTCGCTCTGTTGCCAGGCCTGAGACAATGGAGGAAAAATTATTAAAAGAAGAAATTGATAATTTAAAGAAGGAACTTGAGAAAGAGTCTACAATAAATTCAAATAAGGAATCTGTGGATGAGGCTGGTGGAGACCAAACCAGTAGACATGCAATATTACAACAGAAAGAAAAGGAGCTGGAACTTCTTATCCATGATTTGGACGGCAAAGTTCGTTTTGGGCAGAAAGCCGTTGAAAGGCCAGGTTCATCGGCAGGGAAGTCTTCTACTTTTTCTGATCGGCCACCTTCTAGATCTGGTTCCTTTGAGGATTCTAGAAGTGTGGATTTTACAGACAGACCTCGATCTCGTGGTACAGGAGATATGTGGATGCGTCCTAGTGATGACAGAAGACAGTTTCAAGGTGGTAGCAGGGAAAGGGGATGGTTTTCTTCTGGCAGCAGAAATAGGTCAACGTCAAGAGAGAGATGGTGA

Predicted protein sequences of Glyma08g13980

Limit To All Plant Sequences

>Glyma08g13980.1   sequence type=predicted peptide   gene model=Glyma08g13980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKPWGNIGAWAADSERAEAEEAEAQAAAAAVEPQSFPSLKEAVNSKPKKKKGTTITLSEFNRGGFDQGLTRDEMLTLPTGPKERSAEEMQFNRLGGGFSSYDRSGGRSRDRDGGNNEGSWGGGGRRSYGGFDEERRGPNPRVSELDQPSRADEVDNWASVKKSLPAYDSGRQNRYGGGGGGGFGGSSGGGGFGGSSGGGGFGGGGGFGGGGGGGGFGGASRADDVDNWAVGKKPAPVRSSNFGSSFRDSGVEPDRWTRGDPPREVEQRTERPRLVLDPPRGDGLVNESPVKAMDKANPFGAARPREEVLAEKGLDWKKLDSEIETKKTSRPTSSHSSRPSSAQSNRSEGPGLQGTDAVVKSRPKVNPFGDAKPREAVLGERGMDWRKIDLELERRSVARPETMEEKLLKEEIDNLKKELEKESTINSNKESVDEAGGDQTSRHAILQQKEKELELLIHDLDGKVRFGQKAVERPGSSAGKSSTFSDRPPSRSGSFEDSRSVDFTDRPRSRGTGDMWMRPSDDRRQFQGGSRERGWFSSGSRNRSTSRERW*

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