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Report for Sequence Feature Glyma08g13980

Feature Type:gene_model
Chromosome:Gm08
Start:10171718
stop:10177085
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G26400AT Annotation by Michelle Graham. TAIR10: eukaryotic translation initiation factor 4B1 | chr3:9666616-9669081 FORWARD LENGTH=532 SoyBaseE_val: 5.00E-145ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009630GO-bp Annotation by Michelle Graham. GO Biological Process: gravitropism SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003743GO-mf Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity SoyBaseN/AISS
PTHR13290Panther TRANSLATION INITIATION FACTOR 4H FAMILY JGI ISS
PTHR13290:SF5Panther JGI ISS
PF06273PFAM Plant specific eukaryotic initiation factor 4B JGI ISS
UniRef100_B9SVM6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Translation initiation factor, putative n=1 Tax=Ricinus communis RepID=B9SVM6_RICCO SoyBaseE_val: 5.00E-147ISS
UniRef100_I1KSX1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KSX1_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma05g30786 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g131600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g13980.1   sequence type=CDS   gene model=Glyma08g13980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCAAACCCTGGGGCAACATCGGAGCCTGGGCCGCCGATTCCGAGCGGGCCGAAGCCGAAGAGGCCGAGGCCCAGGCTGCGGCCGCGGCGGTTGAGCCCCAAAGCTTTCCCAGCCTCAAGGAGGCCGTGAACTCCAAGCCCAAGAAGAAGAAGGGAACCACCATCACGCTTTCCGAGTTCAACCGTGGCGGTTTCGACCAGGGCCTTACGCGCGACGAGATGCTCACCCTTCCGACCGGGCCCAAGGAGCGTTCCGCCGAGGAAATGCAGTTCAACCGCCTCGGCGGCGGTTTCTCCTCCTACGACCGCTCCGGCGGTCGCTCGCGCGACCGCGACGGTGGCAACAACGAAGGTTCGTGGGGCGGAGGAGGCAGAAGATCCTACGGTGGATTCGACGAGGAGCGCAGGGGTCCGAATCCTAGGGTTTCGGAACTCGATCAGCCGTCCAGGGCTGATGAGGTTGATAATTGGGCGTCCGTGAAGAAATCTCTCCCTGCCTACGATTCCGGTCGCCAGAATCGCTATGGTGGTGGCGGAGGCGGCGGTTTTGGTGGTAGTTCTGGTGGTGGTGGTTTTGGTGGTAGTTCTGGTGGTGGTGGTTTTGGTGGTGGCGGCGGTTTTGGTGGTGGTGGTGGTGGGGGCGGATTTGGAGGCGCGTCTAGGGCTGATGATGTGGACAATTGGGCGGTTGGTAAGAAGCCTGCTCCTGTTAGATCTTCCAATTTCGGTTCCAGTTTTCGCGATTCCGGCGTGGAGCCTGATCGTTGGACGAGAGGGGATCCGCCGCGTGAGGTTGAGCAGCGGACGGAGAGGCCAAGGCTGGTGTTGGATCCGCCTCGAGGCGATGGTTTGGTGAATGAGTCTCCGGTGAAGGCGATGGATAAGGCGAATCCGTTTGGGGCGGCGAGGCCGCGGGAGGAGGTGTTGGCTGAGAAGGGTTTGGATTGGAAAAAGCTGGATTCGGAGATTGAGACTAAGAAGACGAGCCGTCCCACGAGTTCGCACTCTAGCAGGCCTTCCAGTGCTCAGTCCAATCGTTCTGAGGGTCCCGGGTTGCAGGGGACCGATGCTGTGGTTAAATCCAGGCCCAAGGTGAACCCCTTTGGGGATGCCAAGCCTAGGGAGGCTGTGCTGGGCGAGCGAGGCATGGATTGGAGGAAAATTGATCTTGAATTGGAGCGTCGCTCTGTTGCCAGGCCTGAGACAATGGAGGAAAAATTATTAAAAGAAGAAATTGATAATTTAAAGAAGGAACTTGAGAAAGAGTCTACAATAAATTCAAATAAGGAATCTGTGGATGAGGCTGGTGGAGACCAAACCAGTAGACATGCAATATTACAACAGAAAGAAAAGGAGCTGGAACTTCTTATCCATGATTTGGACGGCAAAGTTCGTTTTGGGCAGAAAGCCGTTGAAAGGCCAGGTTCATCGGCAGGGAAGTCTTCTACTTTTTCTGATCGGCCACCTTCTAGATCTGGTTCCTTTGAGGATTCTAGAAGTGTGGATTTTACAGACAGACCTCGATCTCGTGGTACAGGAGATATGTGGATGCGTCCTAGTGATGACAGAAGACAGTTTCAAGGTGGTAGCAGGGAAAGGGGATGGTTTTCTTCTGGCAGCAGAAATAGGTCAACGTCAAGAGAGAGATGGTGA

>Glyma08g13980.1   sequence type=predicted peptide   gene model=Glyma08g13980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKPWGNIGAWAADSERAEAEEAEAQAAAAAVEPQSFPSLKEAVNSKPKKKKGTTITLSEFNRGGFDQGLTRDEMLTLPTGPKERSAEEMQFNRLGGGFSSYDRSGGRSRDRDGGNNEGSWGGGGRRSYGGFDEERRGPNPRVSELDQPSRADEVDNWASVKKSLPAYDSGRQNRYGGGGGGGFGGSSGGGGFGGSSGGGGFGGGGGFGGGGGGGGFGGASRADDVDNWAVGKKPAPVRSSNFGSSFRDSGVEPDRWTRGDPPREVEQRTERPRLVLDPPRGDGLVNESPVKAMDKANPFGAARPREEVLAEKGLDWKKLDSEIETKKTSRPTSSHSSRPSSAQSNRSEGPGLQGTDAVVKSRPKVNPFGDAKPREAVLGERGMDWRKIDLELERRSVARPETMEEKLLKEEIDNLKKELEKESTINSNKESVDEAGGDQTSRHAILQQKEKELELLIHDLDGKVRFGQKAVERPGSSAGKSSTFSDRPPSRSGSFEDSRSVDFTDRPRSRGTGDMWMRPSDDRRQFQGGSRERGWFSSGSRNRSTSRERW*







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