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Report for Sequence Feature Glyma08g13970

Feature Type:gene_model
Chromosome:Gm08
Start:10165342
stop:10166955
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g13970
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57290AT Annotation by Michelle Graham. TAIR10: 60S acidic ribosomal protein family | chr5:23207049-23207835 REVERSE LENGTH=120 SoyBaseE_val: 6.00E-30ISS
GO:0006414GO-bp Annotation by Michelle Graham. GO Biological Process: translational elongation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
PF00428PFAM 60s Acidic ribosomal protein JGI ISS
UniRef100_I1KSX0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSX0_SOYBN SoyBaseE_val: 2.00E-75ISS
UniRef100_O24413UniRef Annotation by Michelle Graham. Most informative UniRef hit: 60S acidic ribosomal protein P3 n=1 Tax=Zea mays RepID=RLA3_MAIZE SoyBaseE_val: 1.00E-27ISS

Expression Patterns of Glyma08g13970
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g13970 not represented in the dataset
Glyma08g13970 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g13970
ParalogEvidenceComments
Glyma05g30780 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g13970 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g131500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g13970
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g13970
>Glyma08g13970.1   sequence type=CDS   gene model=Glyma08g13970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTCTTCACCTTTGTCGTCCGCAAATCCGGCAGCGAATGGAGCGCCAAGCAACATTCCGGCGACATCGAGGCCTCCGCCGATTCCACCTTCGATCTCCAACGGAAGCTCGTGCAAGCCGCTCTCGCCGTTGATTCCTCCGGTGGAGTTCAGTCCTCTTTCTCTCCCGTGTCTCCTACCTCCGCTGTGTTCCAGGTGATAGTGGGTGGTGCAGTATTCGTTGGAGGTGGTGGTGGTGCTGTTGCAGCTGCACCTGCAGGTGGTGCTGCCGCAGCTGATGCTGCCCCAGCTGCTGAGAAAAAGGAAGAAAAGGTGGAGGAAGAGTCCGATGATGATATGGGATTGGGACTGTTTGATTAG
Predicted protein sequences of Glyma08g13970
>Glyma08g13970.1   sequence type=predicted peptide   gene model=Glyma08g13970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVFTFVVRKSGSEWSAKQHSGDIEASADSTFDLQRKLVQAALAVDSSGGVQSSFSPVSPTSAVFQVIVGGAVFVGGGGGAVAAAPAGGAAAADAAPAAEKKEEKVEEESDDDMGLGLFD*






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