Glyma08g13940 - SoyBase

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Report for Sequence Feature Glyma08g13940

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10145985
stop:	10148834
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g13940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G55270	AT	Annotation by Michelle Graham. TAIR10: mitogen-activated protein kinase phosphatase 1 \| chr3:20496775-20499408 FORWARD LENGTH=784	SoyBase	E_val: 3.00E-163	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0010225	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-C	SoyBase	N/A	ISS
GO:0010374	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex development	SoyBase	N/A	ISS
GO:0016311	GO-bp	Annotation by Michelle Graham. GO Biological Process: dephosphorylation	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0043090	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid import	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004725	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine phosphatase activity	SoyBase	N/A	ISS
GO:0008138	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine/serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016791	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatase activity	SoyBase	N/A	ISS
GO:0017017	GO-mf	Annotation by Michelle Graham. GO Molecular Function: MAP kinase tyrosine/serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG1718	KOG	Dual specificity phosphatase	JGI		ISS
PTHR10159	Panther	DUAL SPECIFICITY PROTEIN PHOSPHATASE	JGI		ISS
PF00782	PFAM	Dual specificity phosphatase, catalytic domain	JGI		ISS
UniRef100_G7J353	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dual specificity protein phosphatase n=1 Tax=Medicago truncatula RepID=G7J353_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KSW7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSW7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g13940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g13940

Paralog	Evidence	Comments
Glyma05g30745	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g13940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g131200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g13940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g13940

Limit To All Plant Sequences

>Glyma08g13940.1   sequence type=CDS   gene model=Glyma08g13940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGGAGAAGAGAGTAACAACAACAACGACCGCGCCGGCGGTCACCGGAGAACAACACATTCCCGGTCAGTTTCCTGGACCGACCGGTCTCCGGTTACCCGGAAACCGCCGCGTCCGCTTCAGCCTCTCGCCATCCACAAACGCAGCGTTTTGGAGTGGCCCAGCGCCGGCTGCGACGATCTCGGTGATTGGTCTCTTCCACCGACCCCTAGAGGGTCCACCAAAACACCAGATTCGGGTTCGGGTCAAGTTTTCCAGTTCAAGAAAGACTATTACGCGTTCTACGACAAGGAATGTTCGAGAATCGCGGAGCACGTGTACCTGGGGAGTGACACGGTGGCGAAGAGCGTCGAGCTTCTGCGGCGGCACGGGATCACGCACGTGCTCAATTGCGTCGGGTTCGTGTGCCCCGAGTATTTCAAAACCGACTTCGTCTACAAGACCCTCTGGCTGCGTGACTCACCCTCGGAGGACATCACCAGCATTCTCTACGACGTCTTCGATTACTTCGAGGATGTCCGGAACCAGGGTGGGCGCGTGTTCGTCCACTGCTGCCAGGGCGTGTCGCGCTCTACCTCGCTCGTCATCGCGTATCTCATGTGGAGGGAAGGCCAGAGCTTCGAGGACGCCTTTCACTATGTCAAGATCGCGCGTGGCGTAACGAACCCCAACATGGGCTTCGCGTGCCAGCTGTTGCAGTGTCAGAAGCGCGTGCACGCCATGCCCGCGAGTCCTAGTTCTGTTCTCAGGATGTATAGGATGGCTCCTCATTCTCCTTATGACCCTCTTCATCTTGTGCCTAAGTTGATTGATCATCCTTCCTCACGCGCTCTTGACTCGCGTGGCGCATTTGTTGTGCATGTGCCTAATGCTATATACGTGTGGATTGGGAAGGAGTGTGGGTCGGTGATGTGTTGCAATGCAAGATCAGCGGCTGCTCAGGTTGTTCGGTATGAGAGGGCAACGGAGAAGATTGTTAGTGTGTTTGAGGATGAAGAGCCTAAGGAGTTTTGGATTGCTCTTTCTACCAAGGAAGTGGTGGTGGTGGAGAATGGAGAGGTGAAGAATGTGGTGGAGAGAATTGAGATTGATGTGGGGATTCGTCCCAGGAGAGTTGAGGAGTATGATTTGGATTTTGGGATTTTTCATAAGGCGCTTGCTGGTGGGGTTGTTCCACCTTTTTCTTTGTCTAATGCTGGATCGGAAAATTGCCTTCCTGCCAGGGAAAATGGGTGGGGGAGATTGACAAGGAAGCTTGCTAGTGGTATCATGAAAGGGTTGTTCACATCCTCTAAGTGCTGTGAGTCTAGTGTGAACATCATTGAAGAGGGAAATCAACATAAGAATGTTGATCCTCCTTTGCCACCATCTTCTAACAATGTGGGTGGTTCGTGGAGTTCCTTTGAGTGTTTTGTAGATAATGGCTTAGAGAGGGGAAAGGATAGTGTTCAACAAGTCAGGGATCAGTTTGTTGTTCCTAGCGTTGGGTCATCAATGCCGCCACCATCGCCTCATAGTCGAGCAGCATCGGATTCTTTTGCTTGTTTTCTAAGTAACAGCTCCAAATTCAGTTCCAAATCTCCACCACTTTCACCCGCCAGTTCGGATTATGCAAGTTCCTTTACATTTTCGCCTTCATCGACTGATTTGTCAATCGTGTCTTCTCGGCAGTCATCGCCTTCCGGTCTGGAATCAGCTGAACCCAATCATGTGAAAGATGCATCTTCCTCAGAGAGTCGCTCTTTAGTTCAGAAAGAAGGTGAGGCATTTCTGGCTAATCACACCTTGGTAGGGGCAAAGTCCAGTTTGCCGCGCAAAGGATCTTCCCTCTCCATTGCAGAGCGCAGAGGGAGTAACCCGCCACCTCGCATGATGCTACCCTTGGCCAGTGAATCATCCCGTGTCAGCAAGGTCCGGGTAAGATCCAGGTCTTTCTCATTGCCTGCCTTGGATGATACTTAG

Predicted protein sequences of Glyma08g13940

Limit To All Plant Sequences

>Glyma08g13940.1   sequence type=predicted peptide   gene model=Glyma08g13940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGEESNNNNDRAGGHRRTTHSRSVSWTDRSPVTRKPPRPLQPLAIHKRSVLEWPSAGCDDLGDWSLPPTPRGSTKTPDSGSGQVFQFKKDYYAFYDKECSRIAEHVYLGSDTVAKSVELLRRHGITHVLNCVGFVCPEYFKTDFVYKTLWLRDSPSEDITSILYDVFDYFEDVRNQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFHYVKIARGVTNPNMGFACQLLQCQKRVHAMPASPSSVLRMYRMAPHSPYDPLHLVPKLIDHPSSRALDSRGAFVVHVPNAIYVWIGKECGSVMCCNARSAAAQVVRYERATEKIVSVFEDEEPKEFWIALSTKEVVVVENGEVKNVVERIEIDVGIRPRRVEEYDLDFGIFHKALAGGVVPPFSLSNAGSENCLPARENGWGRLTRKLASGIMKGLFTSSKCCESSVNIIEEGNQHKNVDPPLPPSSNNVGGSWSSFECFVDNGLERGKDSVQQVRDQFVVPSVGSSMPPPSPHSRAASDSFACFLSNSSKFSSKSPPLSPASSDYASSFTFSPSSTDLSIVSSRQSSPSGLESAEPNHVKDASSSESRSLVQKEGEAFLANHTLVGAKSSLPRKGSSLSIAERRGSNPPPRMMLPLASESSRVSKVRVRSRSFSLPALDDT*

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