Glyma08g13930 - SoyBase

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Report for Sequence Feature Glyma08g13930

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10139412
stop:	10143122
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g13930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G13040	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR-like) superfamily protein \| chr1:4447647-4449200 FORWARD LENGTH=517	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009688	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid biosynthetic process	SoyBase	N/A	ISS
GO:0016114	GO-bp	Annotation by Michelle Graham. GO Biological Process: terpenoid biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_B9SVN3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SVN3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KSW6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSW6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g13930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g13930

Paralog	Evidence	Comments
Glyma05g30730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g13930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g131100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g13930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g13930

Limit To All Plant Sequences

>Glyma08g13930.2   sequence type=CDS   gene model=Glyma08g13930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCAGAGCAGCATTGGCGCACACCGCCTCGCATACCGCTCTCAAATATCAAAACTGGTCAAAGCCGGTCTCATCAACCAAGCCATCTACCTGTTCGACCAAATGACCGAATCAAATTGCCGCGTCTTCAGCGTCGACTACAACCGCTTCATTGGCGTCCTCCTCCGCCACTCCCGCCTCCATCTCGCCCACCACTACTACCGCCGCCACGTCATCCCCCGCGGCTTTTCCCTCCTCCCCTTCACCTACTCCCGCTTCATCTCCGCCCTCTGCTCCGCCCCCAACAACATTAACCTCCCCCTCATCCACAGCCTCCTCCTCGACATGGACTCCCTCGGTTTCGTCCCCGACATTTGGGCCTTCAACACTTACCTCAACCTCTTATGCCGCCAAAATCGCTTAGAAACCGCCCTCGAACTCTTCCACTCCATGCCCTCCAAGGGAAGAGACCCCGACGTCGTTTCCTACACCATCATCATTGACGCGCTGTGCAATGCTAAACGCTTTGACGAGGCTGCTAAGGTTTGGCGTCGTTTGATTGACAAAGGGTTAAGCCCTGATTATAAAGCCTGTGTTGCTCTTGTTGTTGGGTTGTGCAGTGGAGGGCGCGTTGATTTGGCTTATGAGCTTGTTGTTGGTGTGATCAAGGGTGGGGTGAAGGTTAATAGCTTAGTTTATAATGCTTTGATTGATGGGTTTTGTAGGATGGGGAGGGTTGACAAGGCCATGAAGATTAAGGCGTTTATGAGCCGCACCGGGTGTGTGCCGGATTTGGTTACTTATAACATACTCTTGAATTACTGTTGTGAGGAAGGGATGGTGGATGAGGCCGTGAGGTTGGTGGAGACCATGGAGAGGAGCGGGGTGGAGCCGGATTTGTATAGCTATAATGAGCTCTTGAAGGGTTTTTGCAAGGCGAATATGGTGGACAGGGCTCATTTGATGATGGTGGAGAGGATGCAGACAAAAGGGATGTGTGATGTTGTTTCGTATAATACCGTTATTACGGCGTTCTGTAAGGCGCGCCGGACTAGGAAGGGTTATGAGTTGTTTGAGGAGATGTGTGGGAAGGGGATTAGGCCAGACATGGTGACATTTAATATACTTATAGATGCGTTTCTGAGGGAAGGAAGTACCCATGTGGTGAAGAAGCTGCTTGATGAAATGACAAAGATGCGTGTTCTTCCCGATTGTATATTCTATACAGCAGTAGTTGATCATCTGTGTAAGAATGGGAAGGTTGATGTGGCTCATAGTGTTTTTCGTGACATGGTGGAGAATGGGGTTAATCCAGATGTTATCTCTTACAATGCACTTCTAAATGGGTTTTGTAAGACTTCTAGAGTTATGGATGCCATGCATCTATTTGATGAAATGCAGAGCAAAGGTTTGTACCCTGATGAGGTAACTTACAAGTTGATAGTTGGAGGGCTTATAAGGGGAAAAAAGATTTCACTGGCCTGTAGGGTATGGGATCAGATGATGGAGAGAGGCTTTACACTTAACAGACATCTCTCTGAGACTCTAGTCAATGCCATTCAATCAAGTGATGGCACAACATGA

Predicted protein sequences of Glyma08g13930

Limit To All Plant Sequences

>Glyma08g13930.2   sequence type=predicted peptide   gene model=Glyma08g13930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYQSSIGAHRLAYRSQISKLVKAGLINQAIYLFDQMTESNCRVFSVDYNRFIGVLLRHSRLHLAHHYYRRHVIPRGFSLLPFTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQMMERGFTLNRHLSETLVNAIQSSDGTT*

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