Glyma08g13900 - SoyBase

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Report for Sequence Feature Glyma08g13900

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10123632
stop:	10128603
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g13900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67800	AT	Annotation by Michelle Graham. TAIR10: Copine (Calcium-dependent phospholipid-binding protein) family \| chr1:25421029-25423297 REVERSE LENGTH=453	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0045087	GO-bp	Annotation by Michelle Graham. GO Biological Process: innate immune response	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG4172	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR10857	Panther	COPINE	JGI		ISS
PF07002	PFAM	Copine	JGI		ISS
UniRef100_G7J350	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase RGLG2 n=1 Tax=Medicago truncatula RepID=G7J350_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337C78	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337C78 related cluster n=1 Tax=unknown RepID=UPI0002337C78	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g13900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g13900

Paralog	Evidence	Comments
Glyma05g30701	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g13900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g130800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g13900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g13900

Limit To All Plant Sequences

>Glyma08g13900.3   sequence type=transcript   gene model=Glyma08g13900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAACAAAGCTTCTTGACTAAACTGTTAATTAATTTGTCCTGGAGTATGATTTTAAGGCTTTCACATATTTAAATATAGATAGATAGATGTTTGAATAGGAAGAAAAGATTAAACAGTTGTTGTTGACTTGACCTTGCTAGCTAGTTTCCTTCCAACAGGAGCTTTCTTAATTCGTTGTCCTCTTCCTTCTATTTAGTTCAACAAGGAGAAGCTATTCTACTTGACGTGATTAGCGTGAGACATTAATTAACATCCTGCGTGTTGTTAATTCCCTCACAATTCATTTGCAATTCTTGTGTGGAAACAATGCTTCTAGAGCTAGAGACTTGGACAGCTTTGGTTTTTTTGTTTTTGCTTGTGTTGATTCTAAAGGAGTCGATCATGGGAGGTAAGAGTTCAAAAGGGTCTGAAAGAAGGCATGTTTCATCATATGGATCTGCTGGTTCTTCATCTTCATGGGATGACTACGAATACCCTCAATCACCAAATGCATACCCACAACAAAATCCTTATCATACGCCTCTTCACCACCGTGCACCGGCTCCATTCCACGACTATTCACAGCCAAAAAGGAAATTGGATAGGAGATATTCAAGAATAGCTGATGATTACCATTCCCTGGATGAGGTTACCACTGCTCTTTCACATGCTGGCCTGGAATCTTCCAATCTCATTGTTGGAATTGATTTTACAAAGAGCAACGAGTGGACAGGGAAGAGGTCATTCAACCGAAAAAGTTTACATCATATAGGAAGTGGTCAGAATCCTTATGAACAAGCAATCTCGATCATTGGGAAAACATTAAGTGTTTTTGACGAGGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCATCAACACATGATCAAGATGTCTTTAGTTTCCATTCAGATGAGAGGTTCTGCAATGGATTTGAGGAAGTTTTGTCAAGATATAGAGATATTGTTCCTCGCCTGCGTCTAGCAGGACCCACTTCATTTGCCCCTATTATTGAGATGGCCATGACTATAGTTGAGCAAAGTGGTGGCCAATATCATGTCCTGCTAATAATTGCTGATGGACAGGTGACCAGAAGTGTTGACACACAACATGGCCAGCTAAGTCCACAGGAAGAGAAGACAATTGGTGCAATTGTAAAAGCCAGCGGGTATCCACTTTCAATAGTTTTGGTAGGGGTTGGAGATGGACCGTGGGATATGATGAGGGAATTTGATGATAACATCCCAGCTCGAGCATTTGACAATTTTCAGTTTGTGAATTTTACGGAAATAATGTCAAAGGGTATAGACTCAAGCAGAAAAGAGACAGAGTTTGCGCTATCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGATCTTGGCATATTGGGTGCACGGAGAGGACATTCACCAGACAGGGTTCCTCTACCTCCACCTCATTATGAGAGGGCTTCTAGCAGCAGCACAACATCTTTTCGATCAAACAGTTTTCAGCATAGCACACCAACATATGATAATGTAAACGCAGAATCGTCTTCAAGAAGCTCATATGATAATAAGGTTTGCCCGATTTGTCTTACTAATGGGAAGGATATGGCATTTGGTTGCGGGCATCAGACTTGTTGTGACTGTGGAGAAAACCTCGAATGCTGCCCCATTTGCCGAAGCACAATCACTACCAGAATAAAGCTTTACTAGTTAACCTTGCAATGCAGAAAAAAGGGTAGCAAAGAGAGGAGCAGGGTTAGCCAAGATCATGGTGGATAGTTTTTTTTGCCTTTCCAAAACTGCATTTTGCAATTTTGAATAAAAATAAATTAATATGCCAGGGTAGGAAGAGTTGTGGATGCGCGTTGCCTCATTGTACATAAGAAGTTTTTGCTTCCCAAAGGTTTCATGTTTTGATGTAAGCTGCTTGTAAAAAAAAATTAGGTTTTTTTAAGTGTACTACTATTTGTTTTAGTTTTCTTGTTGAAGGTAAATGATACACATCTTAGGTCTCATCGAAAATAAGAGCATCTATAATGTATAATTACTTAAATGAGATATTTATTTTAAATTTATAAGTCTTATAA

Coding sequences of Glyma08g13900

Limit To All Plant Sequences

>Glyma08g13900.2   sequence type=CDS   gene model=Glyma08g13900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCTAGAGCTAGAGACTTGGACAGCTTTGGTTTTTTTGTTTTTGCTTGTGTTGATTCTAAAGGAGTCGATCATGGGAGGTAAGAGTTCAAAAGGGTCTGAAAGAAGGCATGTTTCATCATATGGATCTGCTGGTTCTTCATCTTCATGGGATGACTACGAATACCCTCAATCACCAAATGCATACCCACAACAAAATCCTTATCATACGCCTCTTCACCACCGTGCACCGGCTCCATTCCACGACTATTCACAGCCAAAAAGGAAATTGGATAGGAGATATTCAAGAATAGCTGATGATTACCATTCCCTGGATGAGGTTACCACTGCTCTTTCACATGCTGGCCTGGAATCTTCCAATCTCATTGTTGGAATTGATTTTACAAAGAGCAACGAGTGGACAGGGAAGAGGTCATTCAACCGAAAAAGTTTACATCATATAGGAAGTGGTCAGAATCCTTATGAACAAGCAATCTCGATCATTGGGAAAACATTAAGTGTTTTTGACGAGGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCATCAACACATGATCAAGATGTCTTTAGTTTCCATTCAGATGAGAGGTTCTGCAATGGATTTGAGGAAGTTTTGTCAAGATATAGAGATATTGTTCCTCGCCTGCGTCTAGCAGGACCCACTTCATTTGCCCCTATTATTGAGATGGCCATGACTATAGTTGAGCAAAGTGGTGGCCAATATCATGTCCTGCTAATAATTGCTGATGGACAGGTGACCAGAAGTGTTGACACACAACATGGCCAGCTAAGTCCACAGGAAGAGAAGACAATTGGTGCAATTGTAAAAGCCAGCGGGTATCCACTTTCAATAGTTTTGGTAGGGGTTGGAGATGGACCGTGGGATATGATGAGGGAATTTGATGATAACATCCCAGCTCGAGCATTTGACAATTTTCAGTTTGTGAATTTTACGGAAATAATGTCAAAGGGTATAGACTCAAGCAGAAAAGAGACAGAGTTTGCGCTATCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGATCTTGGCATATTGGGTGCACGGAGAGGACATTCACCAGACAGGGTTCCTCTACCTCCACCTCATTATGAGAGGGCTTCTAGCAGCAGCACAACATCTTTTCGATCAAACAGTTTTCAGCATAGCACACCAACATATGATAATGTAAACGCAGAATCGTCTTCAAGAAGCTCATATGATAATAAGGTTTGCCCGATTTGTCTTACTAATGGGAAGGATATGGCATTTGGTTGCGGGCATCAGACTTGTTGTGACTGTGGAGAAAACCTCGAATGCTGCCCCATTTGCCGAAGCACAATCACTACCAGAATAAAGCTTTACTAG

>Glyma08g13900.3   sequence type=CDS   gene model=Glyma08g13900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCTAGAGCTAGAGACTTGGACAGCTTTGGTTTTTTTGTTTTTGCTTGTGTTGATTCTAAAGGAGTCGATCATGGGAGGTAAGAGTTCAAAAGGGTCTGAAAGAAGGCATGTTTCATCATATGGATCTGCTGGTTCTTCATCTTCATGGGATGACTACGAATACCCTCAATCACCAAATGCATACCCACAACAAAATCCTTATCATACGCCTCTTCACCACCGTGCACCGGCTCCATTCCACGACTATTCACAGCCAAAAAGGAAATTGGATAGGAGATATTCAAGAATAGCTGATGATTACCATTCCCTGGATGAGGTTACCACTGCTCTTTCACATGCTGGCCTGGAATCTTCCAATCTCATTGTTGGAATTGATTTTACAAAGAGCAACGAGTGGACAGGGAAGAGGTCATTCAACCGAAAAAGTTTACATCATATAGGAAGTGGTCAGAATCCTTATGAACAAGCAATCTCGATCATTGGGAAAACATTAAGTGTTTTTGACGAGGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCATCAACACATGATCAAGATGTCTTTAGTTTCCATTCAGATGAGAGGTTCTGCAATGGATTTGAGGAAGTTTTGTCAAGATATAGAGATATTGTTCCTCGCCTGCGTCTAGCAGGACCCACTTCATTTGCCCCTATTATTGAGATGGCCATGACTATAGTTGAGCAAAGTGGTGGCCAATATCATGTCCTGCTAATAATTGCTGATGGACAGGTGACCAGAAGTGTTGACACACAACATGGCCAGCTAAGTCCACAGGAAGAGAAGACAATTGGTGCAATTGTAAAAGCCAGCGGGTATCCACTTTCAATAGTTTTGGTAGGGGTTGGAGATGGACCGTGGGATATGATGAGGGAATTTGATGATAACATCCCAGCTCGAGCATTTGACAATTTTCAGTTTGTGAATTTTACGGAAATAATGTCAAAGGGTATAGACTCAAGCAGAAAAGAGACAGAGTTTGCGCTATCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGATCTTGGCATATTGGGTGCACGGAGAGGACATTCACCAGACAGGGTTCCTCTACCTCCACCTCATTATGAGAGGGCTTCTAGCAGCAGCACAACATCTTTTCGATCAAACAGTTTTCAGCATAGCACACCAACATATGATAATGTAAACGCAGAATCGTCTTCAAGAAGCTCATATGATAATAAGGTTTGCCCGATTTGTCTTACTAATGGGAAGGATATGGCATTTGGTTGCGGGCATCAGACTTGTTGTGACTGTGGAGAAAACCTCGAATGCTGCCCCATTTGCCGAAGCACAATCACTACCAGAATAAAGCTTTACTAG

Predicted protein sequences of Glyma08g13900

Limit To All Plant Sequences

>Glyma08g13900.2   sequence type=predicted peptide   gene model=Glyma08g13900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLELETWTALVFLFLLVLILKESIMGGKSSKGSERRHVSSYGSAGSSSSWDDYEYPQSPNAYPQQNPYHTPLHHRAPAPFHDYSQPKRKLDRRYSRIADDYHSLDEVTTALSHAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGSGQNPYEQAISIIGKTLSVFDEDNLIPCFGFGDASTHDQDVFSFHSDERFCNGFEEVLSRYRDIVPRLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTQHGQLSPQEEKTIGAIVKASGYPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKGIDSSRKETEFALSALMEIPSQYKATIDLGILGARRGHSPDRVPLPPPHYERASSSSTTSFRSNSFQHSTPTYDNVNAESSSRSSYDNKVCPICLTNGKDMAFGCGHQTCCDCGENLECCPICRSTITTRIKLY*

>Glyma08g13900.3   sequence type=predicted peptide   gene model=Glyma08g13900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLELETWTALVFLFLLVLILKESIMGGKSSKGSERRHVSSYGSAGSSSSWDDYEYPQSPNAYPQQNPYHTPLHHRAPAPFHDYSQPKRKLDRRYSRIADDYHSLDEVTTALSHAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGSGQNPYEQAISIIGKTLSVFDEDNLIPCFGFGDASTHDQDVFSFHSDERFCNGFEEVLSRYRDIVPRLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTQHGQLSPQEEKTIGAIVKASGYPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKGIDSSRKETEFALSALMEIPSQYKATIDLGILGARRGHSPDRVPLPPPHYERASSSSTTSFRSNSFQHSTPTYDNVNAESSSRSSYDNKVCPICLTNGKDMAFGCGHQTCCDCGENLECCPICRSTITTRIKLY*

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