Glyma08g13880 - SoyBase

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Report for Sequence Feature Glyma08g13880

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10112714
stop:	10116635
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g13880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G13130	AT	Annotation by Michelle Graham. TAIR10: Cellulase (glycosyl hydrolase family 5) protein \| chr1:4474726-4477820 FORWARD LENGTH=552	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
PF00150	PFAM	Cellulase (glycosyl hydrolase family 5)	JGI		ISS
PF00652	PFAM	Ricin-type beta-trefoil lectin domain	JGI		ISS
UniRef100_B9RMT6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hydrolase, hydrolyzing O-glycosyl compounds, putative n=1 Tax=Ricinus communis RepID=B9RMT6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A257	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A257 related cluster n=1 Tax=unknown RepID=UPI000233A257	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g13880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g13880

Paralog	Evidence	Comments
Glyma05g30681	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g13880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g130600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g13880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g13880

Limit To All Plant Sequences

>Glyma08g13880.2   sequence type=CDS   gene model=Glyma08g13880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAGGTGGAGGCCGAGCACGTTGGTTTTCACTATTCTCTCTGCGCCAATAATAATAATAATAGCATTGCTCTCCTCCGGAGGAACCACCACGGTGGAAGACGTCGACAATGATCACACAATGGCTGTGACGGGTCTGCTTCACACGGATTCCCGATGGATCCTCAACCAAGGTGGGCAAAGGGTGAAGCTTGCATGTGTGAATTGGGTATCCCATTTGGAAGTTGCGGTGGCCGAAGGGCTCAGCAAAAAGCCCGTAGATGCGATTTCAAAGGGAATAAAGTCCATGGGCTTCAACTGTGTCAGGCTCACTTGGCCCACACTTTTGGCCACCAACGACTCTCTCGCTTCTCTCAGCGTTAGACGTTCTTTTCAGAGCCTTGGCCTCCTTGAATCCGTTGCTGGTGTCCAAACCAACAACCCCTCCATCATCGACCTTCCCCTCATCCAAGCTTTTCAGGCAGTGGTGAAGAGTCTCGGGGACAACGATGTGATGGTGATTTTGGACAACCACCTGACCAACCCAGGATGGTGCTGTGGTTACTCCGACGGCAATGGCTTCTTCGGTGACAAATTTTTCAACCCAGACCAGTGGATATTCGGCCTCACCAAGATGGCCACCCTTTTCAATGGTGTCACTAATGTCGTGGGCATGAGCTTGAGGAATGAGCTCCGGGGGCCCAAACAGAATGTCAACGATTGGTACAAGTACATGGTGAAGGGAGCAGAAGCTGTTCATGCAGCAAATCCAGATGTTCTAGTCATTCTATCTGGGATAAATTTTGACACAAGCTTGTCATTCATTCGGGACAGACCAGTGAGCCTCACGTTCAAAGGGAAGCTAGTATTTGAGGTGCACAGGTATGGCTTCACTGATGGTGGAGCTTGGGCTGATGGGAACCCAAACCAAGTATGTGGAAAAGTGACTGCAGATATAAAGCAAACATCTACCTTCTTAGTGGACCAAGGATGGCCATTGTTTGTGAGTGAATTTGGTGGAGACTTGAGAGGTACCAATGTGAATGACAATCGATACCTTAACTGTTTTCTGGCACTGGTAGCTGAGCTTGACTTGGATTGGGCCTATTGGACTCTTGTTGGTAGTTACTACTTTAGAGAAGGGGTTATAGGAATGGAAGAGTTTTATGGCCTTCTCACTTGGGATTGGACTCAGGTTAGGAGTACCAGTTTCTTAAATAGAATCTCTGCCCTCCAAATTCCATTTCGAGGACCAGGCATCATAGAAGGCAGTGCATACAAACTGATATTCCACCCTTTGACAGGTCTCTGTGTCATAAGTAAATCACAGCTAACATCACTAACGTTGGGTCCTTGCTCTTCTTCTGATGCCTGGACATACACACCTCAAAAGACCCTATTGATAAACAATACAAATTTCTGCATACATGCAGAGCAAGAAGGAAAGCCTGCAACACTTAGCATAACATGCTCAGATGCTAACTCTAAATGGGAAATGATCTCAGATTCGAACATGCACCTTTCATCTAAACTAAGCGACGGTTCTAATTTATGTCTAGACGTAGATGATAACAACATCATTGTGACCACTGCTTGTAAATGCTTGAACCAAGATAAGACATGTGACCCTGCAAGCCAATGGTTCAAACTTATTGATAGCGGAAGGAGGTCAATCTCGACAACCTCAACATTATCCATGCTGAATTCACCGGACATTTTGTGGCAACCATTGAGCTCTATATAA

Predicted protein sequences of Glyma08g13880

Limit To All Plant Sequences

>Glyma08g13880.2   sequence type=predicted peptide   gene model=Glyma08g13880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRWRPSTLVFTILSAPIIIIIALLSSGGTTTVEDVDNDHTMAVTGLLHTDSRWILNQGGQRVKLACVNWVSHLEVAVAEGLSKKPVDAISKGIKSMGFNCVRLTWPTLLATNDSLASLSVRRSFQSLGLLESVAGVQTNNPSIIDLPLIQAFQAVVKSLGDNDVMVILDNHLTNPGWCCGYSDGNGFFGDKFFNPDQWIFGLTKMATLFNGVTNVVGMSLRNELRGPKQNVNDWYKYMVKGAEAVHAANPDVLVILSGINFDTSLSFIRDRPVSLTFKGKLVFEVHRYGFTDGGAWADGNPNQVCGKVTADIKQTSTFLVDQGWPLFVSEFGGDLRGTNVNDNRYLNCFLALVAELDLDWAYWTLVGSYYFREGVIGMEEFYGLLTWDWTQVRSTSFLNRISALQIPFRGPGIIEGSAYKLIFHPLTGLCVISKSQLTSLTLGPCSSSDAWTYTPQKTLLINNTNFCIHAEQEGKPATLSITCSDANSKWEMISDSNMHLSSKLSDGSNLCLDVDDNNIIVTTACKCLNQDKTCDPASQWFKLIDSGRRSISTTSTLSMLNSPDILWQPLSSI*

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