Report for Sequence Feature Glyma08g13870
Feature Type: gene_model
Chromosome: Gm08
Start: 10106853
stop: 10110989
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g13870
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G01680 AT
Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:252033-255246 FORWARD LENGTH=740
SoyBase E_val: 6.00E-173 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0043621 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein self-association
SoyBase N/A ISS
PF11594 PFAM
Mediator complex subunit 28
JGI ISS
UniRef100_E2FKH5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Sieve element occlusion e n=1 Tax=Glycine max RepID=E2FKH5_SOYBN
SoyBase E_val: 0 ISS
UniRef100_E2FKH5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Sieve element occlusion e n=1 Tax=Glycine max RepID=E2FKH5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g13870
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma08g13870 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g130500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g13870
Coding sequences of Glyma08g13870
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g13870.2 sequence type=CDS gene model=Glyma08g13870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAATGGTGCCCCGGAAGATGCAATCGAGGCCTAGCCGCCATATTTTTTCAGCATCAGATGACACTACAATGACCAAAAATATTCGTGCCACTCATGCTCCCGTTGATGGACACATTGGCGTTAGACCTCTTCTTCATGTTGTTCAAGACATTTTTCACCGCGCTGCCTCTCTCATCCCTGGCATTGTTCAGGGAAAACAAGTGCAGATGGATGCCATGAAGGACAGTGCATACCAATCTGATTTAGCTAACGTGATAGATATTTCGTACCACACAATCAACAAAATTTCCTGCGAGATATGTTGCAAGTGTTCAAGCGGTGGAGATGTACATGCCACAACCATGGGAATACTGGGCATGCTCTCAAGCTATTCATGGGATGCCAAGGTGGTGATAGCATTGGCAGCATTTGCAGCCAACTTTGGGGAGTTTTGGCTGGTGGCTCAGCTTTATGCCACCAACCGTCTTGCTAAGTCTGTTGCAAAGTTGAAGCACATCCATGAAACACTGGAACAAGTGGATGATTTGGGACCAAAGTTTCAAACAGTCAACAACCTTCTCAAGGCAATGTTGGATGTAACCAATAACATTGTCCAATTCCATGAGCTTCCCTCTCAATACATTGACCCTGAGGCACCAGAGATGTTGACTGCCTCCAATCTTATTCCTGGTGCTGTCTATTGGACCATTCGGAGTATTGTGTCCTGTGCATCGCATATTTTAGGCATAACTGGCTTGGGTCAAGGATATATGACATCAACAACAGAGACTTGGGAGCTTTCCAGTTTGGCCCATAAGCTTGATAACATAAATAGTCACCTTCGAAAGCAACTCACCGTTTGTCGTCAGCATTTAGATGATAACAGACAGAGAGAAGCATTTGCAACACTTCGGCTCCTTTTTGAGACACCCCATCAAGATAATTCGAAGGTTCTCAAAGCTATGTTTTGCAGCAAGGATGATCCGTTGCCACTGTTTGATGGTTCTTCCAAACAAAGGGTTAGCATTGAGGTGCTGAGGAGGAAAATTGTGCTGCTCTATATAACAGACGTACATAATGTCCCCGATCAAGAGCTTGTGATTTTTGAACAAATGTACCAAGAGTCACGTCAAGATTCAACCAGATTAGAGAGTCAATACGAACTCGTTTGGATTCCAGTTGTGGACAAAGCAATCCCGTGGAATGACGTGAAACCGAAGTTTGAGAAGCTGCAATCAATGATGTCTTGTTACTCTCTTTATGACCCTTCTCTATTGGAGCCCGCAACCATCAGGTACATTAAAGAGGTATGGCTTTTCAAAACGAAGCCTATTCTTGTAGTGTTGGATCCCCAAGGGAAGGTTGTGAATCTGAATGCAATACCCATGATGTGGATTTGGGGAAGCTTGGCTTATCCTTTCTCTAGCTCAAGGGAGGAAGCACTGTGGAATGCAGAAACATGGGGACTTGTACTATTGGCAGATTCAATTGATCCATCGCTTTTGGAATGGATATCGGAAGGCAAATATATATGCTTGTACGGAGGTGACGATATTGAGTGGATCCGTAAATTCACAAACACTGCATATTCCCTCGCAAGAACTCTGCAACTACCACTAGAGATGATTTATGTGGGGAAAAGCAATCCAGGAAAGAAAGTTCAAGAAATCAACAATGCCGTACAAACAGAAAAATTGAGCAACGTACTTCCTGACCTTGCCATAAGTTGGTTCTTCTGGGTTAGGCTAGAGAGCATGTGGCACTCTAAATCACAGCAGAGCAAAACAGTAGAGAACGACCACATAATGCATGAAGTAATGAGAATCCTAACCTATGATAGCGGTGACCCGGGATGGGCCGTGATTAGTCAAGGCACGGGAAAGATGGCACAGGGCAAAGGAGACACATTTCTAAAGTGCCTGAATGAACATGAACAATGGAAAGACGCAGCAAAAGATAAAGGACTTTTGCCAGCAATGGATGATTATATAAAAGAACTCCAAACCCCTCACCACTGCAATCGCTTGATACTCCCCGGAACCAGTGGCGGGATACCAGACAAAGTGTCATGTGCTGAATGTGGCCAAACAATGGAAAAATTCTACATGTATCGCTGCTGCAATGAGTAA
Predicted protein sequences of Glyma08g13870
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g13870.2 sequence type=predicted peptide gene model=Glyma08g13870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAMVPRKMQSRPSRHIFSASDDTTMTKNIRATHAPVDGHIGVRPLLHVVQDIFHRAASLIPGIVQGKQVQMDAMKDSAYQSDLANVIDISYHTINKISCEICCKCSSGGDVHATTMGILGMLSSYSWDAKVVIALAAFAANFGEFWLVAQLYATNRLAKSVAKLKHIHETLEQVDDLGPKFQTVNNLLKAMLDVTNNIVQFHELPSQYIDPEAPEMLTASNLIPGAVYWTIRSIVSCASHILGITGLGQGYMTSTTETWELSSLAHKLDNINSHLRKQLTVCRQHLDDNRQREAFATLRLLFETPHQDNSKVLKAMFCSKDDPLPLFDGSSKQRVSIEVLRRKIVLLYITDVHNVPDQELVIFEQMYQESRQDSTRLESQYELVWIPVVDKAIPWNDVKPKFEKLQSMMSCYSLYDPSLLEPATIRYIKEVWLFKTKPILVVLDPQGKVVNLNAIPMMWIWGSLAYPFSSSREEALWNAETWGLVLLADSIDPSLLEWISEGKYICLYGGDDIEWIRKFTNTAYSLARTLQLPLEMIYVGKSNPGKKVQEINNAVQTEKLSNVLPDLAISWFFWVRLESMWHSKSQQSKTVENDHIMHEVMRILTYDSGDPGWAVISQGTGKMAQGKGDTFLKCLNEHEQWKDAAKDKGLLPAMDDYIKELQTPHHCNRLILPGTSGGIPDKVSCAECGQTMEKFYMYRCCNE*