SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G13180 | AT | Annotation by Michelle Graham. TAIR10: Actin-like ATPase superfamily protein | chr1:4495394-4498204 FORWARD LENGTH=427 | SoyBase | E_val: 0 | ISS |
| GO:0000902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell morphogenesis | SoyBase | N/A | ISS |
| GO:0007015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament organization | SoyBase | N/A | ISS |
| GO:0009825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0030833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of actin filament polymerization | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005856 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoskeleton | SoyBase | N/A | ISS |
| GO:0005885 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Arp2/3 protein complex | SoyBase | N/A | ISS |
| GO:0003779 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: actin binding | SoyBase | N/A | ISS |
| GO:0005200 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of cytoskeleton | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG0678 | KOG | Actin-related protein Arp2/3 complex, subunit Arp3 | JGI | ISS | |
| PTHR11937 | Panther | ACTIN | JGI | ISS | |
| PTHR11937:SF31 | Panther | ACTIN RELATED PROTEIN 1 | JGI | ISS | |
| PF00022 | PFAM | Actin | JGI | ISS | |
| UniRef100_B9RMS2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RMS2_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KSV3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSV3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g13810 not represented in the dataset |
Glyma08g13810 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g30630 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g13810.1 sequence type=CDS gene model=Glyma08g13810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCCCTCTACTTCTCGTCCAGCTGTAGTCATCGATAATGGCTCCGGGTATACTAAGATGGGGTTTGCTGGTAATGTTGAGCCATGTTTTATTGTTCCCACAGTGGTTGCAATTAACGAGTCTTTTCTTAATCAATCGAGGAACTCCTCTAAAGGCAATTGGGTTGCCCAGCATAATGCTGGCGTAATGGCAGATCTTGATTTCTTCATTGGGGATGAGGCACTTTCCAAGTCTCGATCTAGCAGCACTTATAATCTCAACTACCCAATTCAGCATGGCCAGGTTGAGAATTGGGACGCCATGGAGCGCTTCTGGCAGCAGTGCATATTCAACTATTTGAGGTGTGATCCGGAGGATCACTATTTTCTCTTGACTGAGAGTCCGTTGACTTCGCCTGAGAGTCGCGAGTATACTGGGGAAATCATGTTTGAGACTTTTAACGTACCTGGGCTTTACATTGGTGTGAATTCTGTGCTTGCTCTTGCAGCTGGTTACACAACATCTAAGTGCGAGATGACAGGAGTTGTAGTCGATGTTGGAGATGGGGCTGCTCATGTTGTACCCGTTGCGGACGGCTATGTTATTGGTAGTAGCATCAAATCAATTCCTATTTCTGGAAAGGATATTACTCTTTTTGTACAGCAGCTTATGCGGGAAAGAGGAGAGAATGTACCACTAGAGGACTCTTTTGAAGTGGCACGGAAAGTGAAGGAAATGTATTGCTACACCTGCTCTGACATTGTGAAGGAATTTAATAAGCATGACAAAGAACCAGCCAAGTATATCAAGCATTGGAGAGGCATTAAACCAAGGACAGGGGCACCATATTCCTGTGATATTGGCTATGAACGATTTCTAGGCCCTGAGATTTTCTTTAATCCCGAGATATATGGCAGTGACTTTACCACCCCTTTGCCAGTTGTAATAGACAAGTGTATTCAGTCTGCGCCAATTGACACAAGGAGATCATTATACAAGAATGTAGTGTTGTCTGGAGGTTCAACCATGTTCAAGGATTTTCACAGGAGGTTGCAACGTGATCTAAAAAAAATAGTGGATGCTCGTGTACTTTTATCTGAATCACGCTTGAATGGGGAGATAAAATCGCAGCCAGTGGAGGTAAATGTACTCAGCAATCCAATCCAGAGATTTGCAGTTTGGTTTGGAGGATCAGTGCTTGCATCAACACCTGAATTTTTTACGGCTTGTCATACAAAGGCAGAATATGAGGAGTATGGAGCAAGCATTTGCCGGACAAATCCTGTTTTCAAGGGAATGTATTAA
>Glyma08g13810.1 sequence type=predicted peptide gene model=Glyma08g13810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDPSTSRPAVVIDNGSGYTKMGFAGNVEPCFIVPTVVAINESFLNQSRNSSKGNWVAQHNAGVMADLDFFIGDEALSKSRSSSTYNLNYPIQHGQVENWDAMERFWQQCIFNYLRCDPEDHYFLLTESPLTSPESREYTGEIMFETFNVPGLYIGVNSVLALAAGYTTSKCEMTGVVVDVGDGAAHVVPVADGYVIGSSIKSIPISGKDITLFVQQLMRERGENVPLEDSFEVARKVKEMYCYTCSDIVKEFNKHDKEPAKYIKHWRGIKPRTGAPYSCDIGYERFLGPEIFFNPEIYGSDFTTPLPVVIDKCIQSAPIDTRRSLYKNVVLSGGSTMFKDFHRRLQRDLKKIVDARVLLSESRLNGEIKSQPVEVNVLSNPIQRFAVWFGGSVLASTPEFFTACHTKAEYEEYGASICRTNPVFKGMY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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