Glyma08g13791 - SoyBase

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Report for Sequence Feature Glyma08g13791

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10073027
stop:	10074236
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g13791

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67740	AT	Annotation by Michelle Graham. TAIR10: photosystem II BY \| chr1:25394429-25394998 REVERSE LENGTH=189	SoyBase	E_val: 1.00E-43	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0009657	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid organization	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009523	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem II	SoyBase	N/A	ISS
GO:0009533	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stromal thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0030095	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast photosystem II	SoyBase	N/A	ISS
GO:0030145	GO-mf	Annotation by Michelle Graham. GO Molecular Function: manganese ion binding	SoyBase	N/A	ISS
PF06298	PFAM	Photosystem II protein Y (PsbY)	JGI		ISS
UniRef100_B9RMR5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Photosystem II core complex proteins psbY, chloroplast n=1 Tax=Ricinus communis RepID=B9RMR5_RICCO	SoyBase	E_val: 8.00E-63	ISS
UniRef100_C6SZ97	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZ97_SOYBN	SoyBase	E_val: 4.00E-132	ISS

Expression Patterns of Glyma08g13791

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g13791 not represented in the dataset	Glyma08g13791 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g13791

Paralog	Evidence	Comments
Glyma05g30600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g13791 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma08g13791

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g13791

Limit To All Plant Sequences

>Glyma08g13791.1   sequence type=CDS   gene model=Glyma08g13791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCAACAATATCAGCAATGGCCATGATCAACGCCAAATGCGTCAACCCAAAGTTCCCCAACCCCACCAAGCTCGTACCATCAAAACCTTCCCTTCAGGTCAACCTTCCAAAGGGCCTAATAGCCTCACCCGAAAACACCAAACTTTCCACTGCGACAGCAATCGCAGGAGCAATATTCACAACCCTCGGAACCTGCGACGCCGCTTTCGCCGTTCAACAAATAGCCGACATAGCAGAAGGCGACAACCGCGGTCTGGCACTGTTGCTGCCCATAATTCCTGCAATAGGGTGGGTTCTGTTCAACATTCTGCAGCCGGCGCTGAACCAACTGAACCGCATGCGCAGCACCAAAGGCGTGATCATTGGGTTGGGGCTTGGCGGCTTGGCTGGCTTGGTGGCTGCGCCGCATGCATCGGCGGCGGCGGCTTCTGAAGTGGCGGCGATGGCTGAAGCTGCCTCGAACGACAACAGGGGACAGCTTCTGCTGTTTGTGGTTACGCCGGCTATTGCTTGGGTTCTTTACAACATCTTGCAGCCTGCTCTTAACCAGCTCAACAGGATGAGATCCCAGTGA

Predicted protein sequences of Glyma08g13791

Limit To All Plant Sequences

>Glyma08g13791.1   sequence type=predicted peptide   gene model=Glyma08g13791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTISAMAMINAKCVNPKFPNPTKLVPSKPSLQVNLPKGLIASPENTKLSTATAIAGAIFTTLGTCDAAFAVQQIADIAEGDNRGLALLLPIIPAIGWVLFNILQPALNQLNRMRSTKGVIIGLGLGGLAGLVAAPHASAAAASEVAAMAEAASNDNRGQLLLFVVTPAIAWVLYNILQPALNQLNRMRSQ*

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