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Report for Sequence Feature Glyma08g13780

Feature Type:gene_model
Chromosome:Gm08
Start:10065033
stop:10071052
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g13780
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G13180AT Annotation by Michelle Graham. TAIR10: Actin-like ATPase superfamily protein | chr1:4495394-4498204 FORWARD LENGTH=427 SoyBaseE_val: 0ISS
GO:0000902GO-bp Annotation by Michelle Graham. GO Biological Process: cell morphogenesis SoyBaseN/AISS
GO:0007015GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament organization SoyBaseN/AISS
GO:0009825GO-bp Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth SoyBaseN/AISS
GO:0010090GO-bp Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis SoyBaseN/AISS
GO:0030833GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of actin filament polymerization SoyBaseN/AISS
GO:0045010GO-bp Annotation by Michelle Graham. GO Biological Process: actin nucleation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005856GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoskeleton SoyBaseN/AISS
GO:0005885GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Arp2/3 protein complex SoyBaseN/AISS
GO:0003779GO-mf Annotation by Michelle Graham. GO Molecular Function: actin binding SoyBaseN/AISS
GO:0005200GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of cytoskeleton SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
KOG0678 KOG Actin-related protein Arp2/3 complex, subunit Arp3 JGI ISS
PTHR11937Panther ACTIN JGI ISS
PTHR11937:SF31Panther ACTIN RELATED PROTEIN 1 JGI ISS
PF00022PFAM Actin JGI ISS
UniRef100_B9RMS2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RMS2_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI0002339274UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339274 related cluster n=1 Tax=unknown RepID=UPI0002339274 SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g13780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g13780 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma08g13780
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g13780
>Glyma08g13780.2   sequence type=CDS   gene model=Glyma08g13780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCCATCTTCTTCTCGTCCAGCTGTAGTTATCGACAATGGCTCCGGGTATACGAAGATGGGGTTTGCTGGTAATGTTGAGCCGTGTTTTATTGCTCCGACAGTTGTTGCTGTTAATGAGTCGTTTCTGAATCAATCGAGGGGCTCTTCTAAAGGCAGTTGGGTGGCCCAGCACAATGCTGGGGTTATGGCAGATCTTGATTTCTTCATCGGGGATGAGGCACTTTCCAAGTCTCGGTCTAGCAGCACTTACAATCTCAGCTACCCGATTCGGCATGGCCAGGTTGAGAATTGGGATGCCATGGAGCGCTTCTGGCAGCAGTGCATTTTCAATTATTTGAGGTGTGATCCGGAGGATCACTATTTCCTCTTGACCGAGAGCCCATTGACCGCGCCCGAGAGTCGCGAGTATACTGGGGAGATCATGTTTGAGACTTTTAATGTGCCTGGACTTTACATTGCTGTCAATTCCGTGCTTGCTCTTGCAGCTGGATACACGACGTCCAAGTGTGAGATGACAGGAGTTGTAGTGGATGTTGGAGATGGAGCTACTCACGTTGTGCCTGTTGCAGACGGCTATGTTATTGGGAGTAGCATCAAATCGATTCCTATTGCCGGAAAAGATATTACTCTTTTTGTTCAGCAGCTTATGCGGGAAAGAGGAGAAAATGTACCACCGGAAGACTCTTTTGAAGTGGCTCGGAAAGTGAAGGAAATGTATTGCTACACCTGCTCTGACATTGTGAAGGAATTTAATAAGCATGACAAAGAACCAGGCAAGTACATCAAGCATTGGAGAGGTATTAAACCAAAGACGGGGGCACCATATTCATGTGATATTGGCTATGAGCGATTTCTTGGCCCTGAGATTTTCTTTAATCCTGAGATATATAGTAGTGACTTTACTACCCCTTTGCCAGTTGTAATAGACAAATGCATTCAGTCTGCGCCAATTGACACAAGGAGATCACTATACAAGAATATCGTGTTGTCTGGAGGTTCAACAATGTTCAAGGATTTTCACAGGAGGTTGCAACGTGATCTTAAGAAAATAGTGGACGCCCGTGCCCTTTCATCTGAAGCACGCATAAATGGGGAGATAAAATCACAGCCAGTGGAGGTAAATGTACTCAGCCATCCAATCCAAAGATTTGCAGTTTGGTTTGGAGGATCAGTACTTGCATCAACACCTGAATTTTTTACGGCTTGTCATACAAAGGCAGAATATGAGGAGTATGGAGCTAGCATTTGCCGTACAAATCCGGTATTCAAGGGGATGTATTAA
Predicted protein sequences of Glyma08g13780
>Glyma08g13780.2   sequence type=predicted peptide   gene model=Glyma08g13780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPSSSRPAVVIDNGSGYTKMGFAGNVEPCFIAPTVVAVNESFLNQSRGSSKGSWVAQHNAGVMADLDFFIGDEALSKSRSSSTYNLSYPIRHGQVENWDAMERFWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATHVVPVADGYVIGSSIKSIPIAGKDITLFVQQLMRERGENVPPEDSFEVARKVKEMYCYTCSDIVKEFNKHDKEPGKYIKHWRGIKPKTGAPYSCDIGYERFLGPEIFFNPEIYSSDFTTPLPVVIDKCIQSAPIDTRRSLYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARALSSEARINGEIKSQPVEVNVLSHPIQRFAVWFGGSVLASTPEFFTACHTKAEYEEYGASICRTNPVFKGMY*






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