SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G24480 | AT | Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:8676440-8677159 REVERSE LENGTH=239 | SoyBase | E_val: 3.00E-120 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| PTHR10108 | Panther | METHYLTRANSFERASE | JGI | ISS | |
| PTHR10108:SF156 | Panther | METHYLTRANSFERASE | JGI | ISS | |
| PF08241 | PFAM | Methyltransferase domain | JGI | ISS | |
| UniRef100_I1KSU9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KSU9_SOYBN | SoyBase | E_val: 8.00E-164 | ISS |
| UniRef100_Q9FYL5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F21J9.14 n=2 Tax=Arabidopsis thaliana RepID=Q9FYL5_ARATH | SoyBase | E_val: 1.00E-117 | ISS |
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Glyma08g13760 not represented in the dataset |
Glyma08g13760 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g13760.1 sequence type=CDS gene model=Glyma08g13760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACATCTCACTCACAAAACCATTCATCCTAAGATGCTTCCTCATCTCCCTCTTCCTCTCCCTACCCTTCCTCTTCCTCTTCCTCCACCTCCTCTCTCCGCCGCCACACGTCACCACCACCACCAACGACCTAAGAATCCGACCCGGTTACTCCTCCTACGACTCCTACATCCAACGCCAGCTCAACAAGACCCTCAACCCGCGCCTCCGAAAAATATGGACAACCCGCGACTGGAACCGCAAAATCCCGGTTTTCGCGCGCTTCTTCGAGGACCTTAAGGATAAAAAACTTCTCAATAACGCGTCCAAGGCACTCTGCATAGGCGCGCGCGTGGGCCAAGAGGTGGAGGCGCTGAGGCGAATCGGCGTTAGTGACTCCGTTGGAATGGACCTCGTTCCATACCCTCCGCTTGTCGTTAAGGGTGACTTTCACAACCAGCCGTTTGATGACGGCACGTTCGATTTCGAATTCTCGAACGTGTTCGATCACGCGCTGTACCCGGAACGATTCGTGGGCGAGATCGAACGCACGTTGAAGCCCAACGGCGTGTGCGTGCTGCACGTGGCGCTGTCGAGACGCGCGGATAAGTACTCCGCTAACGACCTCTTCAGCGTGGAGCCCCTCGTAGCGATGTTTAAGAACTCCGCTCTGGTTCACGTTCGTAGCGTCGATGGTTTTGGATTGGACACCGAGGTTGCGTTTCGTAAGAACGTACATTGA
>Glyma08g13760.1 sequence type=predicted peptide gene model=Glyma08g13760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNISLTKPFILRCFLISLFLSLPFLFLFLHLLSPPPHVTTTTNDLRIRPGYSSYDSYIQRQLNKTLNPRLRKIWTTRDWNRKIPVFARFFEDLKDKKLLNNASKALCIGARVGQEVEALRRIGVSDSVGMDLVPYPPLVVKGDFHNQPFDDGTFDFEFSNVFDHALYPERFVGEIERTLKPNGVCVLHVALSRRADKYSANDLFSVEPLVAMFKNSALVHVRSVDGFGLDTEVAFRKNVH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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